Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001192

Physical Location & Seq

Genomic Coordinates Reverse (-)

76706031 .. 76709380

Gene Structure 3350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGGGAGATGCATATCATCCGGTAACTATTGGGCAGTGTATTCAATTGCCTCCCAATGTACATTCGGAGGGAATAAAAGGGAAGAAAGATCGTTGGGGACTGGGGTTTTCCCTTCCGATGCTGGAAATGCAGATGGCCATCATTTTCATCATCACCAAAGTCCTCCATTTAATTTTGAAGAAGTTTCATATCTCTAAGTTCAACAGCCAGCTTCTTGCGGGTATACTCCTCGGCCACCTTGGCAAAAACCTCAGCCTCCCCGGGACGGATAAGAAGTTGGACGAACTAACATTTCCTGTAGACAGTCAAGAAGTAATTAGTGTTCTGGGTGAGCTTGGCTTTGGACTCTTTCTGTTCGTCATTGGAGTGAAAATGGAGGTGGAAATGATAAGAAGAATAGGACGTAAAGCGATCCTCACCGGTACTTTATGCACGTTGGTCCCTTTGGTCAGCGGTATAAGTCTTCAAAAGCTTACCGCAGGACCTGTATTTGGCATTGACAAGGAAAAAACCGACAGGCTTACGGTTGTGACTGCCATACATACACTAACTTTTTTTCCGGTTGTTTCTCTCCTTCTCGAGGAACTGAAGCTCCTCAATTCTGAAATGGGCCGGTTAAGCCTGACTGCTACCATAGTCTGTGAGCTCTTAAGTTTGTTTCTCCAGTTTGTTAACAGATCAATTTCATCCATAACTAATGAAGGACATGAGAGGGATTTAGTACACCTCGCAATAGCCTTTGGTTACGTTACTTCTGTTGCGGTAATATTTAGACCAATAATGTTATGGGTTGTTAGGAAGACCCCGGACAACAGGCCAGTCAAGAAAATCTATCTCAATGCCATAGTCCTGCTGGTGTTTGTGTCTGGAATAGGTTCACATCTATACGGCCAGACATTTCATTTTGGCCCTCTCATATTTGGTTTGGCTGTCCCAGCTGGACAACCTCTGGGATCGGCTTTGGAAGAAAAATTCCATCTCTTTGTTTTCGAAGTGTTTCTACCCCTTTTTGTGACTACATATGCAATGAGGGCTGATTTTGGGTCGATCAGATTGGACGATCCAAGAACACAGCTTACAATAATCCTCATAATGATAGATGATTCTGCTGATTCTGTGTATGCTGTGACACTCGCTAGCGTTGTAGTGACTTCAACTCTCGTGCCTATTATAGTGAAGCGCCTCTATGATCCTTCAAGAAAATACGCAGGCTACGAGAGAAGGGACATTATGCATTTGAAACCTAATGCAGAGCTCAAAATTCTCACCTGCATCCACAGGTCATCTAACATGCCTGCAGTGATCAATCTACTTGATGCAGCGTGTCCATCTAAAGAAAACCCCATTAATGTTTGTGTACTCCATCTCATCGAATTAATCGGCAGAACGGCTCCCATATTTATCTCCCACCAAGTGCAGGGGAAAACAGTTTCCCATGTTAATACATATTCAGCAAATGTGATCCTTTATTTCAATCAGTTTGAGAAAGAAAATCGTGGTGCTGTTAATTTGAGCATCTTCACAGCAATCTCTCCACCAAATATCATGCATGAACATATTATTGAGTCGGAAGACAATACTATAAGGACACTAAACTTCAGTGTACTCGAAAGAGCTCCTTGTTCCGTTGGTATCCTTGTGGATCGGGGACATTTAGTCTTCTTGGGAGGGAAAGATGACAGGGAGGCATTGACCTTTGCCAAAAGAATGGCCAGGGACTCGACGATTAGGTTAACAGTAATCCATTTAGTGGCCATGGGTAATGAATTGCTGTTGAAGGAGTTCAAATATAACCATGTGGGTGAAGGTCTTGTAATATATTTAGAGGAAATGGTGAAAGATGGACCGCAAACAGCCTTTCTATTAAGGTCTATGGTGGCAGAGTATGATATAATCATAGTTGGGAGAAGTCATAAGTTAGAGTCACCTCAGACGGTAGGGCTTTTCGAATGGTGCGAATTTCCGGAGTTGGGGATAATAGGAGACTTGCTTGCATTACCTGATGTCGATTGTAAGGCCTCCATTCTTGTGATGCAACAACAAGAGTTGAGCAGAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

687

Amino Acids

76.39

Weight (kDa)

7.09

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	51 - 356	1e-23	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44900 AT5G22900
fragaria_vesca	FvH4_3g06341 FvH4_3g23050 FvH4_3g39831 FvH4_6g14510 FvH4_7g14610
malus_domestica	MD02G1295300.v1.1 MD03G1057300.v1.1 MD05G1291400.v1.1 MD10G1267300.v1.1 MD11G1059200.v1.1 MD14G1082300.v1.1
prunus_persica	Prupe.1G346300_v2.0.a1 Prupe.2G029000_v2.0.a1 Prupe.4G074200_v2.0.a1 Prupe.6G047400_v2.0.a1 Prupe.6G047500_v2.0.a1 Prupe.6G047600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0356111 RchiOBHm_Chr1g0356121 RchiOBHm_Chr4g0446581 RchiOBHm_Chr5g0071781
rosa_laevigata	RLG00000005649 RLG00000028106 RLG00000036246 RLG00000036247 RLG00000036248
rosa_multiflora	Rmu_sc0001113.1_g000009 Rmu_sc0002569.1_g000023 Rmu_sc0003229.1_g000013 Rmu_sc0036166.1_g000001 Rmu_ssc0000144.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009380 Rroxscaffold_1G00009410 Rroxscaffold_4G00299800 Rroxscaffold_5G00386970
rosa_rugosa	Rorug04G0372400 Rorug05G0414600 Rorug05G0414700
rosa_samantha	Rh1AG262500 Rh1BG231000 Rh1CG245800 Rh4AG434100 Rh4BG443300 Rh4CG460600 Rh4DG442100 Rh5AG470700 Rh5BG490400 Rh5CG514400 Rh5DG501400 Rh5DG501600 Rh5DG501700
rosa_wichuraiana	Rw1G023190 Rw4G037110 Rw5G043740 Rw5G043750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1277
Acc36I	ACCTGC	1 cut(s)	1277
AccB7I	CCANNNNNTGG	1 cut(s)	1750
AccI	GTMKAC	2 cut(s)	223, 300
AccIII	TCCGGA	1 cut(s)	1963
AciI	CCGC	5 cut(s)	218, 453, 477, 761, 1847
AclWI	GGATC	6 cut(s)	406, 961, 1055, 1184, 1456, 1650
AcoI	YGGCCR	5 cut(s)	135, 232, 889, 1710, 1752
AcsI	RAATTY	3 cut(s)	971, 1260, 1958
AcuI	CTGAAG	2 cut(s)	608, 1582
AdeI	CACNNNGTG	1 cut(s)	1414
AfaI	GTAC	5 cut(s)	60, 424, 723, 1359, 1605
AfiI	CCNNNNNNNGG	6 cut(s)	265, 491, 580, 1417, 1750, 1970
AflII	CTTAAG	1 cut(s)	649
AgeI	ACCGGT	1 cut(s)	419
AhdI	GACNNNNNGTC	1 cut(s)	1655
AjnI	CCWGG	1 cut(s)	1712
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	9 cut(s)	211, 334, 472, 592, 646, 938, 1075, 1255, 1616
AluI	AGCT	9 cut(s)	211, 334, 472, 592, 646, 938, 1075, 1255, 1616
Alw21I	GWGCWC	3 cut(s)	648, 1257, 1618
Alw26I	GTCTC	1 cut(s)	1977
AlwI	GGATC	6 cut(s)	406, 961, 1055, 1184, 1456, 1650
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	2 cut(s)	260, 578
Aor13HI	TCCGGA	1 cut(s)	1963
AoxI	GGCC	9 cut(s)	135, 232, 610, 815, 889, 907, 1710, 1752, 2016
ApeKI	GCWGC	1 cut(s)	1319
ApoI	RAATTY	3 cut(s)	971, 1260, 1958
AseI	ATTAAT	2 cut(s)	1347, 1376
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	3 cut(s)	874, 996, 1781
AspLEI	GCGC	1 cut(s)	1182
AspS9I	GGNCC	5 cut(s)	439, 482, 610, 908, 1844
AsuC2I	CCSGG	3 cut(s)	261, 262, 806
AsuHPI	GGTGA	7 cut(s)	145, 341, 409, 1258, 1814, 1846, 1917
AsuII	TTCGAA	2 cut(s)	990, 1947
AsuNHI	GCTAGC	1 cut(s)	1136
AvaI	CYCGRG	2 cut(s)	260, 578
AvaII	GGWCC	3 cut(s)	439, 482, 1844
BalI	TGGCCA	3 cut(s)	137, 1712, 1754
BanII	GRGCYC	3 cut(s)	648, 1257, 1618
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	1160
BbsI	GAAGAC	4 cut(s)	455, 806, 1578, 1651
Bbv12I	GWGCWC	3 cut(s)	648, 1257, 1618
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	1331
BccI	CCATC	6 cut(s)	127, 146, 984, 1336, 1371, 1835
BceAI	ACGGC	2 cut(s)	904, 1404
BciT130I	CCWGG	1 cut(s)	1714
BciVI	GTATCC	1 cut(s)	1643
BclI	TGATCA	1 cut(s)	1302
BcnI	CCSGG	3 cut(s)	261, 262, 806
BcoDI	GTCTC	1 cut(s)	1977
BfaI	CTAG	1 cut(s)	1137
BfmI	CTRYAG	2 cut(s)	297, 1296
BfoI	RGCGCY	1 cut(s)	1183
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	1277
BfuI	GTATCC	1 cut(s)	1643
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	1320
BlsI	GCNGC	1 cut(s)	1321
Bme1390I	CCNGG	4 cut(s)	261, 262, 806, 1714
Bme18I	GGWCC	3 cut(s)	439, 482, 1844
BmeRI	GACNNNNNGTC	1 cut(s)	1655
BmeT110I	CYCGRG	2 cut(s)	260, 578
BmgT120I	GGNCC	5 cut(s)	439, 482, 610, 908, 1844
BmiI	GGNNCC	2 cut(s)	441, 1392
BmrFI	CCNGG	4 cut(s)	261, 262, 806, 1714
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	5 cut(s)	108, 1281, 1306, 1524, 2022
BmtI	GCTAGC	1 cut(s)	1140
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	4 cut(s)	455, 806, 1578, 1651
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	2 cut(s)	990, 1947
BpuMI	CCSGG	3 cut(s)	261, 262, 806
BsaBI	GATNNNNATC	2 cut(s)	12, 137
BsaJI	CCNNGG	7 cut(s)	229, 238, 259, 260, 804, 1713, 1755
BsaWI	WCCGGW	4 cut(s)	19, 419, 559, 1963
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	6 cut(s)	265, 491, 580, 1417, 1750, 1970
Bse118I	RCCGGY	2 cut(s)	419, 612
Bse1I	ACTGG	3 cut(s)	105, 664, 818
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	2 cut(s)	12, 137
BseAI	TCCGGA	1 cut(s)	1963
BseBI	CCWGG	1 cut(s)	1714
BseDI	CCNNGG	7 cut(s)	229, 238, 259, 260, 804, 1713, 1755
BseGI	GGATG	3 cut(s)	16, 686, 1272
BseJI	GATNNNNATC	2 cut(s)	12, 137
BseLI	CCNNNNNNNGG	6 cut(s)	265, 491, 580, 1417, 1750, 1970
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	2 cut(s)	265, 1943
BseNI	ACTGG	3 cut(s)	105, 664, 818
BseRI	GAGGAG	2 cut(s)	218, 584
BseXI	GCAGC	1 cut(s)	1331
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	1 cut(s)	1436
BshFI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1712, 1754, 2018
BshTI	ACCGGT	1 cut(s)	419
BsiHKAI	GWGCWC	3 cut(s)	648, 1257, 1618
BsiHKCI	CYCGRG	2 cut(s)	260, 578
BsiSI	CCGG	7 cut(s)	20, 261, 420, 560, 613, 806, 1964
BslFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1238, 1662, 1730
BslI	CCNNNNNNNGG	6 cut(s)	265, 491, 580, 1417, 1750, 1970
BsmAI	GTCTC	1 cut(s)	1977
BsmFI	GGGAC	7 cut(s)	111, 277, 425, 917, 1238, 1662, 1730
BsnI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1712, 1754, 2018
BsoBI	CYCGRG	2 cut(s)	260, 578
Bsp119I	TTCGAA	2 cut(s)	990, 1947
Bsp1286I	GDGCHC	3 cut(s)	648, 1257, 1618
Bsp13I	TCCGGA	1 cut(s)	1963
Bsp1407I	TGTACA	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	1755
BspACI	CCGC	5 cut(s)	218, 453, 477, 761, 1847
BspANI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1712, 1754, 2018
BspCNI	CTCAG	2 cut(s)	264, 1942
BspEI	TCCGGA	1 cut(s)	1963
BspLI	GGNNCC	2 cut(s)	441, 1392
BspMAI	CTGCAG	1 cut(s)	1300
BspMI	ACCTGC	1 cut(s)	1277
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	6 cut(s)	406, 961, 1055, 1184, 1456, 1650
BspT104I	TTCGAA	2 cut(s)	990, 1947
BspTI	CTTAAG	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	2 cut(s)	419, 612
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	105, 664, 818
BssAI	RCCGGY	2 cut(s)	419, 612
BssECI	CCNNGG	7 cut(s)	229, 238, 259, 260, 804, 1713, 1755
BssNAI	GTATAC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	1160
BssT1I	CCWWGG	2 cut(s)	238, 1755
Bst1107I	GTATAC	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	1160
Bst2UI	CCWGG	1 cut(s)	1714
Bst4CI	ACNGT	5 cut(s)	305, 526, 1429, 1738, 1936
BstAFI	CTTAAG	1 cut(s)	649
BstAUI	TGTACA	1 cut(s)	58
BstBI	TTCGAA	2 cut(s)	990, 1947
BstC8I	GCNNGC	5 cut(s)	209, 1138, 1210, 1296, 1992
BstDEI	CTNAG	3 cut(s)	195, 251, 1929
BstDSI	CCRYGG	1 cut(s)	1755
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	16, 686, 1272
BstH2I	RGCGCY	1 cut(s)	1183
BstHHI	GCGC	1 cut(s)	1182
BstMAI	GTCTC	1 cut(s)	1977
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
BstNI	CCWGG	1 cut(s)	1714
BstNSI	RCATGY	1 cut(s)	1294
BstSCI	CCNGG	4 cut(s)	259, 260, 804, 1712
BstSFI	CTRYAG	2 cut(s)	297, 1296
BstV1I	GCAGC	1 cut(s)	1331
BstV2I	GAAGAC	4 cut(s)	455, 806, 1578, 1651
BstXI	CCANNNNNNTGG	1 cut(s)	1708
BstZ17I	GTATAC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	1643
BsuRI	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1712, 1754, 2018
BtgI	CCRYGG	1 cut(s)	1755
BtsCI	GGATG	3 cut(s)	16, 686, 1272
BtsI	GCAGTG	2 cut(s)	41, 1305
BtsIMutI	CAGTG	3 cut(s)	41, 1305, 1606
BveI	ACCTGC	1 cut(s)	1277
Cac8I	GCNNGC	5 cut(s)	209, 1138, 1210, 1296, 1992
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	1182
Cfr10I	RCCGGY	2 cut(s)	419, 612
Cfr13I	GGNCC	5 cut(s)	439, 482, 610, 908, 1844
Cfr9I	CCCGGG	1 cut(s)	260
Csp6I	GTAC	5 cut(s)	59, 423, 722, 1358, 1604
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	7 cut(s)	707, 1291, 1436, 1546, 1550, 1756, 1796
CviQI	GTAC	5 cut(s)	59, 423, 722, 1358, 1604
DdeI	CTNAG	3 cut(s)	195, 251, 1929
DraIII	CACNNNGTG	1 cut(s)	1414
DriI	GACNNNNNGTC	1 cut(s)	1655
EaeI	YGGCCR	5 cut(s)	135, 232, 889, 1710, 1752
Eam1105I	GACNNNNNGTC	1 cut(s)	1655
Ecl136II	GAGCTC	3 cut(s)	646, 1255, 1616
Eco130I	CCWWGG	2 cut(s)	238, 1755
Eco147I	AGGCCT	1 cut(s)	2018
Eco24I	GRGCYC	3 cut(s)	648, 1257, 1618
Eco47I	GGWCC	3 cut(s)	439, 482, 1844
Eco53kI	GAGCTC	3 cut(s)	646, 1255, 1616
Eco57I	CTGAAG	2 cut(s)	608, 1582
Eco88I	CYCGRG	2 cut(s)	260, 578
EcoICRI	GAGCTC	3 cut(s)	646, 1255, 1616
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	1712
EcoT14I	CCWWGG	2 cut(s)	238, 1755
EcoT22I	ATGCAT	3 cut(s)	13, 1236, 1551
EcoT38I	GRGCYC	3 cut(s)	648, 1257, 1618
ErhI	CCWWGG	2 cut(s)	238, 1755
FaeI	CATG	7 cut(s)	710, 1294, 1439, 1549, 1553, 1759, 1799
FalI	AAGNNNNNCTT	2 cut(s)	1603, 1635
FaqI	GGGAC	7 cut(s)	111, 277, 425, 917, 1238, 1662, 1730
FatI	CATG	7 cut(s)	706, 1290, 1435, 1545, 1549, 1755, 1795
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	1302
FblI	GTMKAC	2 cut(s)	223, 300
Fnu4HI	GCNGC	1 cut(s)	1320
FokI	GGATG	3 cut(s)	3, 673, 1259
FriOI	GRGCYC	3 cut(s)	648, 1257, 1618
Fsp4HI	GCNGC	1 cut(s)	1320
FspBI	CTAG	1 cut(s)	1137
GlaI	GCGC	1 cut(s)	1181
GluI	GCNGC	1 cut(s)	1320
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	1183
HaeIII	GGCC	9 cut(s)	137, 234, 612, 817, 891, 909, 1712, 1754, 2018
HapII	CCGG	7 cut(s)	20, 261, 420, 560, 613, 806, 1964
HhaI	GCGC	1 cut(s)	1182
Hin1II	CATG	7 cut(s)	710, 1294, 1439, 1549, 1553, 1759, 1799
Hin6I	GCGC	1 cut(s)	1180
HinP1I	GCGC	1 cut(s)	1180
HincII	GTYRAC	2 cut(s)	673, 1734
HindII	GTYRAC	2 cut(s)	673, 1734
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	6 cut(s)	345, 1103, 1112, 1565, 1718, 1922
HpaI	GTTAAC	2 cut(s)	673, 1734
HpaII	CCGG	7 cut(s)	20, 261, 420, 560, 613, 806, 1964
HphI	GGTGA	7 cut(s)	145, 341, 409, 1258, 1814, 1846, 1917
Hpy166II	GTNNAC	8 cut(s)	224, 301, 673, 724, 878, 1358, 1604, 1734
Hpy188I	TCNGA	6 cut(s)	67, 117, 604, 1052, 1570, 1932
Hpy188III	TCNNGA	6 cut(s)	308, 578, 823, 867, 1197, 1964
Hpy8I	GTNNAC	8 cut(s)	224, 301, 673, 724, 878, 1358, 1604, 1734
Hpy99I	CGWCG	1 cut(s)	1726
HpyAV	CCTTC	7 cut(s)	122, 584, 695, 1203, 1215, 1771, 1799
HpyCH4III	ACNGT	5 cut(s)	305, 526, 1429, 1738, 1936
HpyCH4IV	ACGT	3 cut(s)	403, 434, 747
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
HpyF3I	CTNAG	3 cut(s)	195, 251, 1929
HpySE526I	ACGT	3 cut(s)	403, 434, 747
Hsp92II	CATG	7 cut(s)	710, 1294, 1439, 1549, 1553, 1759, 1799
HspAI	GCGC	1 cut(s)	1180
Kpn2I	TCCGGA	1 cut(s)	1963
Ksp22I	TGATCA	1 cut(s)	1302
KspAI	GTTAAC	2 cut(s)	673, 1734
LmnI	GCTCC	3 cut(s)	597, 1396, 1621
Lsp1109I	GCAGC	1 cut(s)	1331
LweI	GCATC	5 cut(s)	108, 1281, 1306, 1524, 2022
MaeI	CTAG	1 cut(s)	1137
MaeII	ACGT	3 cut(s)	403, 434, 747
MaeIII	GTNAC	8 cut(s)	22, 529, 743, 748, 1012, 1126, 1147, 1923
MboII	GAAGA	9 cut(s)	94, 190, 405, 455, 811, 977, 1510, 1583, 1651
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	648, 1257, 1618
MlsI	TGGCCA	3 cut(s)	137, 1712, 1754
MluNI	TGGCCA	3 cut(s)	137, 1712, 1754
MlyI	GAGTC	4 cut(s)	339, 1574, 1712, 1931
MmeI	TCCRAC	2 cut(s)	258, 1548
Mox20I	TGGCCA	3 cut(s)	137, 1712, 1754
Mph1103I	ATGCAT	3 cut(s)	13, 1236, 1551
MroI	TCCGGA	1 cut(s)	1963
MroXI	GAANNNNTTC	3 cut(s)	874, 996, 1781
MscI	TGGCCA	3 cut(s)	137, 1712, 1754
MslI	CAYNNNNRTG	3 cut(s)	365, 1800, 2027
Msp20I	TGGCCA	3 cut(s)	137, 1712, 1754
MspA1I	CMGCKG	2 cut(s)	453, 938
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	7 cut(s)	20, 261, 420, 560, 613, 806, 1964
MspR9I	CCNGG	4 cut(s)	261, 262, 806, 1714
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	1714
MwoI	GCNNNNNNNGC	5 cut(s)	127, 240, 618, 935, 1031
NciI	CCSGG	3 cut(s)	261, 262, 806
NcoI	CCATGG	1 cut(s)	1755
NdeI	CATATG	1 cut(s)	1021
NheI	GCTAGC	1 cut(s)	1136
NlaIII	CATG	7 cut(s)	710, 1294, 1439, 1549, 1553, 1759, 1799
NlaIV	GGNNCC	2 cut(s)	441, 1392
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	5 cut(s)	529, 1012, 1126, 1147, 1923
NsiI	ATGCAT	3 cut(s)	13, 1236, 1551
NspI	RCATGY	1 cut(s)	1294
NspV	TTCGAA	2 cut(s)	990, 1947
PaeR7I	CTCGAG	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	1277
PceI	AGGCCT	1 cut(s)	2018
PcsI	WCGNNNNNNNCGW	2 cut(s)	1212, 1953
PdmI	GAANNNNTTC	3 cut(s)	874, 996, 1781
PfeI	GAWTC	2 cut(s)	1103, 1112
PflMI	CCANNNNNTGG	1 cut(s)	1750
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	1321
PleI	GAGTC	4 cut(s)	339, 1573, 1712, 1930
PpsI	GAGTC	4 cut(s)	339, 1573, 1712, 1930
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	2 cut(s)	1347, 1376
Psp124BI	GAGCTC	3 cut(s)	648, 1257, 1618
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	1712
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	1712
PspN4I	GGNNCC	2 cut(s)	441, 1392
PspPI	GGNCC	5 cut(s)	439, 482, 610, 908, 1844
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	4 cut(s)	306, 338, 1060, 1092
PstI	CTGCAG	1 cut(s)	1300
PstNI	CAGNNNCTG	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	5 cut(s)	60, 424, 723, 1359, 1605
RsaNI	GTAC	5 cut(s)	59, 423, 722, 1358, 1604
RseI	CAYNNNNRTG	3 cut(s)	365, 1800, 2027
SacI	GAGCTC	3 cut(s)	648, 1257, 1618
SatI	GCNGC	1 cut(s)	1320
Sau96I	GGNCC	5 cut(s)	439, 482, 610, 908, 1844
SchI	GAGTC	4 cut(s)	339, 1574, 1712, 1931
ScrFI	CCNGG	4 cut(s)	261, 262, 806, 1714
SduI	GDGCHC	3 cut(s)	648, 1257, 1618
SfaNI	GCATC	5 cut(s)	108, 1281, 1306, 1524, 2022
SfcI	CTRYAG	2 cut(s)	297, 1296
Sfr274I	CTCGAG	1 cut(s)	578
SfuI	TTCGAA	2 cut(s)	990, 1947
SinI	GGWCC	3 cut(s)	439, 482, 1844
SlaI	CTCGAG	1 cut(s)	578
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	3 cut(s)	365, 1800, 2027
SmlI	CTYRAG	2 cut(s)	578, 649
SmoI	CTYRAG	2 cut(s)	578, 649
SseBI	AGGCCT	1 cut(s)	2018
SsiI	CCGC	5 cut(s)	218, 453, 477, 761, 1847
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	1 cut(s)	1137
SstI	GAGCTC	3 cut(s)	648, 1257, 1618
StuI	AGGCCT	1 cut(s)	2018
StyD4I	CCNGG	4 cut(s)	259, 260, 804, 1712
StyI	CCWWGG	2 cut(s)	238, 1755
TaaI	ACNGT	5 cut(s)	305, 526, 1429, 1738, 1936
TaiI	ACGT	3 cut(s)	406, 437, 750
TaqI	TCGA	8 cut(s)	579, 990, 1046, 1371, 1608, 1721, 1947, 2007
TatI	WGTACW	4 cut(s)	58, 721, 1357, 1603
TfiI	GAWTC	2 cut(s)	1103, 1112
TscAI	CASTG	3 cut(s)	41, 1305, 1606
TseFI	GTSAC	5 cut(s)	529, 1012, 1126, 1147, 1923
TseI	GCWGC	1 cut(s)	1319
Tsp45I	GTSAC	5 cut(s)	529, 1012, 1126, 1147, 1923
TspDTI	ATGAA	7 cut(s)	136, 176, 675, 714, 890, 1566, 1779
TspGWI	ACGGA	2 cut(s)	281, 1615
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	3 cut(s)	41, 1305, 1606
Van91I	CCANNNNNTGG	1 cut(s)	1750
Vha464I	CTTAAG	1 cut(s)	649
VpaK11BI	GGWCC	3 cut(s)	439, 482, 1844
VspI	ATTAAT	2 cut(s)	1347, 1376
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	3 cut(s)	971, 1260, 1958
XceI	RCATGY	1 cut(s)	1294
XcmI	CCANNNNNNNNNTGG	2 cut(s)	783, 850
XhoI	CTCGAG	1 cut(s)	578
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	223, 300
XmnI	GAANNNNTTC	3 cut(s)	874, 996, 1781
XspI	CTAG	1 cut(s)	1137
Zsp2I	ATGCAT	3 cut(s)	13, 1236, 1551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.