FvH4_3g13561

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001312
Physical Location & Seq
Reverse (-)
8135327 .. 8140436
5110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13561.t1

Sequence Viewer

Length: 1674 bp
ATGACGCGTTATTACATTGACCGTTACCTGAGCAATCAAACCTTTTACAGAATTCAATCCCAGTCGATCATTGATAATCCAGACCAGCGAATTGTTGATGATCTAAGTTCTTTCACGGGGACGGCCCTATCGTTCTCTTTAACACTCTTCAATGCTGTGATAGATCTCATATCATTCAGCAACATCTTGTTTGGTATCTATCCTCCGTTGTTTGTTGTTCTTCTATTATATTCGATTGGTGGAACAGTGATCAGTGTCTTTCTTGGAAGGGGTCTGGTGTCATTAAACTTCTTGCAAGAGAAAAAGGAAGCAGATTTTCGTTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCAATAGCTTTCTATAGTGGTGAAGACAATGAAATGCAACTCTTGCTGCAACGCTTCAAAAGTGCTTTTGAGAATCTAACTCAATTGTTGATATCTTCAAGAAATCTTGAATTCTTCACCAGTGGATACCGCTATCTTATTCAGATTCTTCCTGCTGCTGTCGTTGCTCCTATGTACTTCGCTGGAAAGATTGAGTTTGGTGTCATAAATCAGTCAGTATCTGCTTTTAATCATATCCTGGGGGACTTCTCCCTTATCGTATACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGGTGAATTTGATGATTATTTGGATATCGGCTCTCAACGCCATTCTGACCCCGCAGAAGGGATAACTCTTACATATAGTAATGTTAAAACTTTGGCTGATCTAGAGCCAAATGGATCCATGCCTATAGATAAGCAACAAAAGCTACTGGATATAGAGAATTTGACTGTGCAAACACCAAGTAGCACTACTCTGGTTAGGGATTTATCATTGGTAATCAACAACAATGAGAATCTATTGGTGACGGGACCTAGCGGGAGTGGTAAGACTTCTTTGTTAAGAACTTTGGCTGGTCTTTGGAGTGCTGGGAAAGGAAAAATCACGTTCTATGTGGAAGATGAAGAAGAGCTTCTATCATCCAATTCTCCAGGTGTAGCGCCTCTTGATACTGCTAATGGTAAACATGGGGAACTTGGAAGATCCTCAAATAGGAATTATAAGGGCATATTTTTCCTTCCTCAAAGACCGTATATGGTTCTGGGAACACTTCGTCAACAATTGCTGTATCCTACATGGGCTAATGATGAGACTTCCACATCAGATAATACTAAACCAACTGGTTCTCTTCCTTTCTTGATGCAGGCCCCAAACTTAGAGTATAAGACTGCAAAGCCTAAACCTACAACGGAGGATCTGATACAGGTTTTGGAAGATGTCCGGCTTGGCTATATATTACCCCGATTCAGTAACTTGGATTCTACTTATGAATGGTCTAGTGTCCTCTCCCTCGGAGAACAGCAACGCCTTGCTTTTGCACGCCTGTTGCTTTCAAAACCGAAGTTGGTTCTTTTAGATGAATCTACCAGTGCTTTAGATGAAGCCAACGAGGCTCATCTATACAAGCAGATAGAAAGAGCAGGTATCACATATATTAGTATTGGCCACCGGCGAACTTTATATCAGTACCACAGCAAGAACTTGCGTATATCCACAGTTGATCCGAGCAATGCAAAACAGAATTGGCTCATTGAACCCATCAATCAAGACAATTTGTTTAATCTGTCAAATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

558

Amino Acids

62.56

Weight (kDa)

5.24

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 2 - 178 2.7e-37 ABC transporter transmembrane region 2
SbmA_BacA PF05992 15 - 226 5.3e-15 SbmA/BacA-like family
ABC_tran PF00005 287 - 330 2.3e-07 ABC transporter
ABC_tran PF00005 396 - 489 7.8e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
Acc36I ACCTGC 1 cut(s) 1508
AccI GTMKAC 1 cut(s) 615
AccII CGCG 2 cut(s) 7, 336
AciI CCGC 3 cut(s) 484, 714, 915
AclWI GGATC 5 cut(s) 771, 784, 1074, 1299, 1592
AcoI YGGCCR 1 cut(s) 1540
AcsI RAATTY 4 cut(s) 51, 464, 668, 820
AfaI GTAC 2 cut(s) 530, 1565
AfiI CCNNNNNNNGG 3 cut(s) 719, 720, 1089
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 7 cut(s) 56, 151, 412, 453, 464, 1431, 1631
AjnI CCWGG 2 cut(s) 591, 1027
AluBI AGCT 3 cut(s) 362, 805, 1009
AluI AGCT 3 cut(s) 362, 805, 1009
Alw26I GTCTC 1 cut(s) 1181
AlwI GGATC 5 cut(s) 771, 784, 1074, 1299, 1592
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 3 cut(s) 123, 1242, 1540
ApeKI GCWGC 2 cut(s) 400, 509
ApoI RAATTY 4 cut(s) 51, 464, 668, 820
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 3 cut(s) 336, 638, 1039
AspS9I GGNCC 3 cut(s) 124, 908, 1243
AsuHPI GGTGA 4 cut(s) 386, 463, 677, 913
AvaII GGWCC 1 cut(s) 908
BalI TGGCCA 1 cut(s) 1542
BamHI GGATCC 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 387, 496
BccI CCATC 1 cut(s) 1643
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 2 cut(s) 593, 1029
BciVI GTATCC 2 cut(s) 473, 1176
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 1181
BfaI CTAG 3 cut(s) 764, 912, 1374
BfmI CTRYAG 3 cut(s) 367, 786, 1670
BfoI RGCGCY 1 cut(s) 1040
BfuAI ACCTGC 1 cut(s) 1508
BfuI GTATCC 2 cut(s) 473, 1176
BglI GCCNNNNNGGC 1 cut(s) 1487
BglII AGATCT 1 cut(s) 163
BisI GCNGC 2 cut(s) 401, 510
BlsI GCNGC 2 cut(s) 402, 511
Bme1390I CCNGG 2 cut(s) 593, 1029
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 124, 908, 1243
BmiI GGNNCC 3 cut(s) 778, 909, 1245
BmrFI CCNGG 2 cut(s) 593, 1029
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 1227
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 1011
Bpu10I CCTNAGC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 592, 1387
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 720, 1089
Bse118I RCCGGY 1 cut(s) 1545
Bse1I ACTGG 5 cut(s) 61, 474, 813, 1222, 1464
Bse3DI GCAATG 1 cut(s) 1612
BseBI CCWGG 2 cut(s) 593, 1029
BseDI CCNNGG 2 cut(s) 592, 1387
BseGI GGATG 1 cut(s) 1016
BseLI CCNNNNNNNGG 3 cut(s) 719, 720, 1089
BseMI GCAATG 1 cut(s) 1612
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 5 cut(s) 61, 474, 813, 1222, 1464
BseXI GCAGC 2 cut(s) 387, 496
BseYI CCCAGC 1 cut(s) 965
Bsh1236I CGCG 2 cut(s) 7, 336
BshFI GGCC 3 cut(s) 125, 1244, 1542
BsiSI CCGG 2 cut(s) 1318, 1546
BslFI GGGAC 3 cut(s) 133, 611, 921
BslI CCNNNNNNNGG 3 cut(s) 719, 720, 1089
BsmAI GTCTC 1 cut(s) 1181
BsmFI GGGAC 3 cut(s) 133, 611, 921
BsnI GGCC 3 cut(s) 125, 1244, 1542
BspACI CCGC 3 cut(s) 484, 714, 915
BspANI GGCC 3 cut(s) 125, 1244, 1542
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 7, 336
BspLI GGNNCC 3 cut(s) 778, 909, 1245
BspMI ACCTGC 1 cut(s) 1508
BspPI GGATC 5 cut(s) 771, 784, 1074, 1299, 1592
BspQI GCTCTTC 1 cut(s) 999
BsrDI GCAATG 1 cut(s) 1612
BsrFI RCCGGY 1 cut(s) 1545
BsrI ACTGG 5 cut(s) 61, 474, 813, 1222, 1464
BssAI RCCGGY 1 cut(s) 1545
BssECI CCNNGG 2 cut(s) 592, 1387
BssNAI GTATAC 1 cut(s) 616
Bst1107I GTATAC 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 593, 1029
Bst4CI ACNGT 5 cut(s) 23, 247, 829, 1128, 1594
Bst6I CTCTTC 3 cut(s) 152, 999, 1230
BstAPI GCANNNNNTGC 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 1242, 1417
BstDEI CTNAG 3 cut(s) 29, 104, 1252
BstENI CCTNNNNNAGG 1 cut(s) 1087
BstF5I GGATG 1 cut(s) 1016
BstFNI CGCG 2 cut(s) 7, 336
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 3 cut(s) 336, 638, 1039
BstMAI GTCTC 1 cut(s) 1181
BstMWI GCNNNNNNNGC 6 cut(s) 397, 518, 644, 699, 802, 1487
BstNI CCWGG 2 cut(s) 593, 1029
BstSCI CCNGG 2 cut(s) 591, 1027
BstSFI CTRYAG 3 cut(s) 367, 786, 1670
BstUI CGCG 2 cut(s) 7, 336
BstV1I GCAGC 2 cut(s) 387, 496
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 4 cut(s) 163, 776, 1079, 1291
BstYI RGATCY 4 cut(s) 163, 776, 1079, 1291
BstZ17I GTATAC 1 cut(s) 616
BsuI GTATCC 2 cut(s) 473, 1176
BsuRI GGCC 3 cut(s) 125, 1244, 1542
BtsCI GGATG 1 cut(s) 1016
BtsIMutI CAGTG 4 cut(s) 252, 259, 481, 1471
BveI ACCTGC 1 cut(s) 1508
Cac8I GCNNGC 2 cut(s) 1242, 1417
CaiI CAGNNNCTG 1 cut(s) 575
CfoI GCGC 3 cut(s) 336, 638, 1039
Cfr10I RCCGGY 1 cut(s) 1545
Cfr13I GGNCC 3 cut(s) 124, 908, 1243
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 529, 1564
CviAII CATG 3 cut(s) 781, 1064, 1173
CviQI GTAC 2 cut(s) 529, 1564
DdeI CTNAG 3 cut(s) 29, 104, 1252
EaeI YGGCCR 1 cut(s) 1540
Eam1104I CTCTTC 3 cut(s) 152, 999, 1230
EarI CTCTTC 3 cut(s) 152, 999, 1230
Eco32I GATATC 2 cut(s) 447, 688
Eco47I GGWCC 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 1087
EcoO109I RGGNCCY 2 cut(s) 908, 1243
EcoRI GAATTC 2 cut(s) 51, 464
EcoRII CCWGG 2 cut(s) 591, 1027
EcoRV GATATC 2 cut(s) 447, 688
FaeI CATG 3 cut(s) 784, 1067, 1176
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 3 cut(s) 133, 611, 921
FatI CATG 3 cut(s) 780, 1063, 1172
FauI CCCGC 2 cut(s) 721, 908
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 401, 510
FokI GGATG 1 cut(s) 1003
Fsp4HI GCNGC 2 cut(s) 401, 510
FspBI CTAG 3 cut(s) 764, 912, 1374
GlaI GCGC 3 cut(s) 335, 637, 1038
GluI GCNGC 2 cut(s) 401, 510
GsaI CCCAGC 1 cut(s) 969
GsuI CTGGAG 1 cut(s) 1011
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 3 cut(s) 125, 1244, 1542
HapII CCGG 2 cut(s) 1318, 1546
HgaI GACGC 1 cut(s) 13
HhaI GCGC 3 cut(s) 336, 638, 1039
Hin1II CATG 3 cut(s) 784, 1067, 1176
Hin6I GCGC 3 cut(s) 334, 636, 1037
HinP1I GCGC 3 cut(s) 334, 636, 1037
HincII GTYRAC 1 cut(s) 1154
HindII GTYRAC 1 cut(s) 1154
HinfI GANTC 7 cut(s) 353, 427, 499, 892, 1341, 1355, 1457
HpaII CCGG 2 cut(s) 1318, 1546
HphI GGTGA 4 cut(s) 386, 463, 677, 913
Hpy166II GTNNAC 3 cut(s) 616, 1061, 1154
Hpy188I TCNGA 6 cut(s) 498, 709, 1201, 1296, 1391, 1602
Hpy188III TCNNGA 8 cut(s) 80, 341, 453, 461, 764, 1043, 1234, 1643
Hpy8I GTNNAC 3 cut(s) 616, 1061, 1154
HpyAV CCTTC 3 cut(s) 261, 713, 1124
HpyCH4III ACNGT 5 cut(s) 23, 247, 829, 1128, 1594
HpyCH4IV ACGT 1 cut(s) 983
HpyCH4V TGCA 8 cut(s) 295, 391, 403, 832, 1240, 1268, 1415, 1610
HpyF10VI GCNNNNNNNGC 6 cut(s) 397, 518, 644, 699, 802, 1487
HpyF3I CTNAG 3 cut(s) 29, 104, 1252
HpySE526I ACGT 1 cut(s) 983
Hsp92II CATG 3 cut(s) 784, 1067, 1176
HspAI GCGC 3 cut(s) 334, 636, 1037
Ksp22I TGATCA 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 387, 496
LweI GCATC 1 cut(s) 1227
MaeI CTAG 3 cut(s) 764, 912, 1374
MaeII ACGT 1 cut(s) 983
MaeIII GTNAC 3 cut(s) 23, 901, 1346
MfeI CAATTG 2 cut(s) 437, 1157
MflI RGATCY 4 cut(s) 163, 776, 1079, 1291
MlsI TGGCCA 1 cut(s) 1542
MluI ACGCGT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 1542
MnlI CCTC 8 cut(s) 213, 1050, 1093, 1128, 1282, 1391, 1397, 1480
Mox20I TGGCCA 1 cut(s) 1542
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 1542
MseI TTAA 6 cut(s) 140, 284, 582, 747, 938, 1656
Msp20I TGGCCA 1 cut(s) 1542
MspI CCGG 2 cut(s) 1318, 1546
MspR9I CCNGG 2 cut(s) 593, 1029
MunI CAATTG 2 cut(s) 437, 1157
MvaI CCWGG 2 cut(s) 593, 1029
MvnI CGCG 2 cut(s) 7, 336
MwoI GCNNNNNNNGC 6 cut(s) 397, 518, 644, 699, 802, 1487
NlaIII CATG 3 cut(s) 784, 1067, 1176
NlaIV GGNNCC 3 cut(s) 778, 909, 1245
NmuCI GTSAC 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 7 cut(s) 353, 427, 499, 892, 1341, 1355, 1457
PkrI GCNGC 2 cut(s) 402, 511
PpuMI RGGWCCY 1 cut(s) 908
PsiI TTATAA 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 2 cut(s) 591, 1027
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 2 cut(s) 591, 1027
PspN4I GGNNCC 3 cut(s) 778, 909, 1245
PspPI GGNCC 3 cut(s) 124, 908, 1243
PspPPI RGGWCCY 1 cut(s) 908
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 4 cut(s) 163, 776, 1079, 1291
RsaI GTAC 2 cut(s) 530, 1565
RsaNI GTAC 2 cut(s) 529, 1564
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 6 cut(s) 140, 284, 582, 747, 938, 1656
SatI GCNGC 2 cut(s) 401, 510
Sau96I GGNCC 3 cut(s) 124, 908, 1243
ScrFI CCNGG 2 cut(s) 593, 1029
SfaNI GCATC 1 cut(s) 1227
SfcI CTRYAG 3 cut(s) 367, 786, 1670
SgrAI CRCCGGYG 1 cut(s) 1545
SinI GGWCC 1 cut(s) 908
SsiI CCGC 3 cut(s) 484, 714, 915
SspMI CTAG 3 cut(s) 764, 912, 1374
StyD4I CCNGG 2 cut(s) 591, 1027
TaaI ACNGT 5 cut(s) 23, 247, 829, 1128, 1594
TaiI ACGT 1 cut(s) 986
TaqI TCGA 4 cut(s) 65, 233, 340, 658
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 7 cut(s) 353, 427, 499, 892, 1341, 1355, 1457
Tru1I TTAA 6 cut(s) 140, 284, 582, 747, 938, 1656
Tru9I TTAA 6 cut(s) 140, 284, 582, 747, 938, 1656
TscAI CASTG 4 cut(s) 252, 259, 481, 1471
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 2 cut(s) 400, 509
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 5 cut(s) 399, 1014, 1380, 1470, 1491
TspGWI ACGGA 2 cut(s) 195, 1301
TspRI CASTG 4 cut(s) 252, 259, 481, 1471
VpaK11BI GGWCC 1 cut(s) 908
XagI CCTNNNNNAGG 1 cut(s) 1087
XapI RAATTY 4 cut(s) 51, 464, 668, 820
XbaI TCTAGA 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 3 cut(s) 764, 912, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.