MD10G1220400.v1.1

ABC transporter D family member 2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
31858838 .. 31863419
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1220400.v1.1.491

Sequence Viewer

Length: 1815 bp
ATGATAATTGAAGACAAGAACCAAAAACAATTCACGAAGCAGCTGCTTTACTACTTAGCTGCATTTGCTGGTGGAATTCCGATTTTTGTGTTGCGATATTATGCAAGACAAACTCTTTCGTTGAGGTGGAGAGCTTGGATGACAAAACATTACATGGACCGTTACCTAAGCAACCAAGCCTTTTATAAAATTCAATCCCAATCAATGATTGATAATCCAGATCAGCGCATTGTTGATGATCTAAATTCGTTCACTGGGACTGCCCTATCCTTTACTGTAACAATTTTCGATGCTGTGATAGATCTCATCTCGTTCAGTAACATCTTATTCAGTATCTATCCTCCGCTGTTTGCTGTTCTATTTGTATATTCAATTGGTGGAACAGCCATAAGTATCTATCTTGGAAAGAATTTGGTTTCTTTAAACTTCATGCAAGAGAAAAAGGAAGCTGATTTTCGTTATGGACTTGTGCGCGTCAGAGAAAATGCTGAATCCATTGCTTTCTATAGTGGTGAAGCAAATGAAATGCAACTTTTGCTACAACGCTTCACAAGTGCTTTCAAAAATATGAGTAAATTGTTGATATGTTCAAGAAATGTCGACTTTTTCACCAGTTGGTACATCTATCTTGTTCAGATTCTTCCCGCTGCTGTTGTTGCCCCTATGTATTTCTCAGGCAAAATTGGGTTTGGTGTCATTAATCAGTCCACATCTGCTTTCAATCATATTCTTGATGACTTCTCCCTTATTGTCTACGAAATTCAGGCTATCAGTGCATTTGCAGCTGTAATTAATCGACTTGGTGAATTTGACGATCTATTGGATAGGAGCAAGTCGGAACGCCATTCTGACCTCTCAGAAGGGATAAGTCTGATATATAGTAACGTCAAAAGTTTACCGGAACCGGAGTCAAATGGATCCATTCCCATAGAAAGGCAAGAAAAGTTAGTGGATATAGAGCATTTGACTGTGGAGACTCCAAGTGGTACTGCATTGGTTAGGAATCTATCGTTGGTAATCAACAAGAATGAGCATTTATTGGTAACAGGACCAAGTGGGAGCGGTAAAACATCTTTGTTAAGAGCTATGTGTGGTCTTTGGAGTACTGGAAAAGGAAAAATCATATTCCATGTGAAGGACGGAGAAGATAATCAACCGTCCATCTCTTCTGGTGTAGTAGTTCTTGACGTAGATACTGGTAGTGATAAATATGGGGAACTTGGAAGGCCCTCAAATAGGAATTATGAAGGCATATTTTTCCTTCCTCAAAAACCATATATGGTATTGGGAACACTTCGCCAACAGTTGCTTTATCCTACATGGGCTGAGGATGCGATTTCCACAGCGGACGGTACTAAACCAACTGGGTCACTTCCTTTCTTGAAGCAGGCACCAAAATCAGAACATACGAGTGAAAAGCCTAGTAAGCCCACAACGGAGGACCTGATACAGGTTTTGGAGGATGTCCGACTTGGCAATTTATTATCCCGATTCAGCAGTTTGGATACTTCAAATGATTGGTCTAGTGTTCTCTCCCTTGGAGAGCAGCAACGCCTTGCTTTTGCACGCTTACTGCTCTCCAAACCAAAATTGGTTCTACTGGATGAATCTACCAGTGCTTTAGATGAAGCCAACGAGGCTCATTTATATCAGCAGGTTGAAAAGGCGGGCATAACATATATAAGCGTTGGCCACCGGCGAACTCTGTACGACTTCCACAAGAAGAACTTACTGATATCCACCGTGGATCCCAGCAGCGCCGAACACAATTGGAGCATTGATTCCATCGATCGAGAAGCATCATGCAACTTATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

605

Amino Acids

67.77

Weight (kDa)

5.76

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 4 - 224 9.5e-47 ABC transporter transmembrane region 2
ABC_membrane PF00664 4 - 242 5e-06 ABC transporter transmembrane region
SbmA_BacA PF05992 8 - 272 3.8e-18 SbmA/BacA-like family
ABC_tran PF00005 334 - 539 1.9e-18 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 1645
AccB1I GGYRCC 1 cut(s) 1390
AccBSI CCGCTC 1 cut(s) 1062
AccI GTMKAC 2 cut(s) 600, 753
AccII CGCG 1 cut(s) 474
AciI CCGC 5 cut(s) 344, 645, 1062, 1346, 1667
AclWI GGATC 4 cut(s) 912, 925, 1742, 1755
AcoI YGGCCR 1 cut(s) 1690
AcsI RAATTY 6 cut(s) 75, 189, 244, 409, 759, 806
AfaI GTAC 5 cut(s) 620, 988, 1105, 1354, 1709
AfiI CCNNNNNNNGG 4 cut(s) 933, 1135, 1236, 1450
AgsI TTSAA 9 cut(s) 11, 194, 372, 562, 591, 721, 1384, 1512, 1661
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AluBI AGCT 6 cut(s) 43, 59, 134, 449, 785, 1085
AluI AGCT 6 cut(s) 43, 59, 134, 449, 785, 1085
Alw26I GTCTC 1 cut(s) 968
AlwI GGATC 4 cut(s) 912, 925, 1742, 1755
AoxI GGCC 2 cut(s) 1226, 1690
ApeKI GCWGC 7 cut(s) 40, 43, 59, 647, 782, 1546, 1755
ApoI RAATTY 6 cut(s) 75, 189, 244, 409, 759, 806
ArsI GACNNNNNNTTYG 2 cut(s) 1505, 1537
AseI ATTAAT 2 cut(s) 699, 792
AspLEI GCGC 3 cut(s) 228, 474, 1760
AspS9I GGNCC 4 cut(s) 157, 1049, 1227, 1441
AsuHPI GGTGA 3 cut(s) 524, 601, 815
AvaII GGWCC 3 cut(s) 157, 1049, 1441
BalI TGGCCA 1 cut(s) 1692
BamHI GGATCC 2 cut(s) 917, 1747
BanI GGYRCC 1 cut(s) 1390
BbsI GAAGAC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 7 cut(s) 30, 46, 52, 634, 794, 1558, 1767
BccI CCATC 2 cut(s) 1169, 1793
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciVI GTATCC 1 cut(s) 1498
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 2 cut(s) 1422, 1524
BfmI CTRYAG 1 cut(s) 505
BfoI RGCGCY 1 cut(s) 1761
BfuAI ACCTGC 1 cut(s) 1645
BfuI GTATCC 1 cut(s) 1498
BglI GCCNNNNNGGC 1 cut(s) 1637
BglII AGATCT 1 cut(s) 301
BisI GCNGC 7 cut(s) 41, 44, 60, 648, 783, 1547, 1756
BlsI GCNGC 7 cut(s) 42, 45, 61, 649, 784, 1548, 1757
BmcAI AGTACT 1 cut(s) 1105
Bme18I GGWCC 3 cut(s) 157, 1049, 1441
BmgT120I GGNCC 4 cut(s) 157, 1049, 1227, 1441
BmiI GGNNCC 4 cut(s) 903, 919, 1392, 1749
BmrI ACTGGG 2 cut(s) 264, 1374
BmsI GCATC 3 cut(s) 280, 1321, 1808
BmuI ACTGGG 2 cut(s) 264, 1374
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 167, 1326
Bsa29I ATCGAT 1 cut(s) 1788
BsaJI CCNNGG 2 cut(s) 1537, 1743
BsaWI WCCGGW 2 cut(s) 898, 904
Bsc4I CCNNNNNNNGG 4 cut(s) 933, 1135, 1236, 1450
Bse118I RCCGGY 1 cut(s) 1695
Bse1I ACTGG 7 cut(s) 259, 612, 1111, 1201, 1369, 1605, 1614
Bse3DI GCAATG 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 1788
BseDI CCNNGG 2 cut(s) 1537, 1743
BseGI GGATG 4 cut(s) 144, 1336, 1468, 1609
BseLI CCNNNNNNNGG 4 cut(s) 933, 1135, 1236, 1450
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 3 cut(s) 687, 870, 1317
BseNI ACTGG 7 cut(s) 259, 612, 1111, 1201, 1369, 1605, 1614
BseXI GCAGC 7 cut(s) 30, 46, 52, 634, 794, 1558, 1767
BseYI CCCAGC 1 cut(s) 1751
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 1792
BshFI GGCC 2 cut(s) 1228, 1692
BshNI GGYRCC 1 cut(s) 1390
BshVI ATCGAT 1 cut(s) 1788
BsiEI CGRYCG 1 cut(s) 1792
BsiSI CCGG 3 cut(s) 899, 905, 1696
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 4 cut(s) 933, 1135, 1236, 1450
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 2 cut(s) 1228, 1692
Bsp143I GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
BspACI CCGC 5 cut(s) 344, 645, 1062, 1346, 1667
BspANI GGCC 2 cut(s) 1228, 1692
BspCNI CTCAG 3 cut(s) 686, 869, 1318
BspDI ATCGAT 1 cut(s) 1788
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 903, 919, 1392, 1749
BspMI ACCTGC 1 cut(s) 1645
BspPI GGATC 4 cut(s) 912, 925, 1742, 1755
BspT107I GGYRCC 1 cut(s) 1390
BsrBI CCGCTC 1 cut(s) 1062
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 1695
BsrI ACTGG 7 cut(s) 259, 612, 1111, 1201, 1369, 1605, 1614
BssAI RCCGGY 1 cut(s) 1695
BssECI CCNNGG 2 cut(s) 1537, 1743
BssMI GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
BssT1I CCWWGG 1 cut(s) 1537
Bst4CI ACNGT 7 cut(s) 161, 277, 970, 1158, 1305, 1352, 1744
Bst6I CTCTTC 1 cut(s) 1171
BstAPI GCANNNNNTGC 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 1389, 1567, 1669
BstDEI CTNAG 5 cut(s) 55, 167, 673, 856, 1326
BstDSI CCRYGG 1 cut(s) 1743
BstENI CCTNNNNNAGG 2 cut(s) 1234, 1448
BstF5I GGATG 4 cut(s) 144, 1336, 1468, 1609
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 1761
BstHHI GCGC 3 cut(s) 228, 474, 1760
BstKTI GATC 7 cut(s) 223, 241, 304, 817, 920, 1750, 1792
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
BstMCI CGRYCG 1 cut(s) 1792
BstMWI GCNNNNNNNGC 8 cut(s) 65, 535, 656, 773, 782, 1331, 1426, 1637
BstSFI CTRYAG 1 cut(s) 505
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 7 cut(s) 30, 46, 52, 634, 794, 1558, 1767
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 301, 917, 1747
BstYI RGATCY 3 cut(s) 301, 917, 1747
Bsu15I ATCGAT 1 cut(s) 1788
BsuI GTATCC 1 cut(s) 1498
BsuRI GGCC 2 cut(s) 1228, 1692
BsuTUI ATCGAT 1 cut(s) 1788
BtgI CCRYGG 1 cut(s) 1743
BtsCI GGATG 4 cut(s) 144, 1336, 1468, 1609
BtsIMutI CAGTG 3 cut(s) 252, 778, 1621
BveI ACCTGC 1 cut(s) 1645
Cac8I GCNNGC 3 cut(s) 1389, 1567, 1669
CfoI GCGC 3 cut(s) 228, 474, 1760
Cfr10I RCCGGY 1 cut(s) 1695
Cfr13I GGNCC 4 cut(s) 157, 1049, 1227, 1441
ClaI ATCGAT 1 cut(s) 1788
CseI GACGC 1 cut(s) 463
Csp6I GTAC 5 cut(s) 619, 987, 1104, 1353, 1708
CviAII CATG 5 cut(s) 154, 430, 1130, 1320, 1803
CviQI GTAC 5 cut(s) 619, 987, 1104, 1353, 1708
DdeI CTNAG 5 cut(s) 55, 167, 673, 856, 1326
DpnI GATC 7 cut(s) 222, 240, 303, 816, 919, 1749, 1791
DpnII GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
DraI TTTAAA 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 1690
Eam1104I CTCTTC 1 cut(s) 1171
EarI CTCTTC 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 1537
Eco32I GATATC 1 cut(s) 1737
Eco47I GGWCC 3 cut(s) 157, 1049, 1441
EcoNI CCTNNNNNAGG 2 cut(s) 1234, 1448
EcoO109I RGGNCCY 2 cut(s) 1227, 1441
EcoRI GAATTC 1 cut(s) 75
EcoRV GATATC 1 cut(s) 1737
EcoT14I CCWWGG 1 cut(s) 1537
ErhI CCWWGG 1 cut(s) 1537
FaeI CATG 5 cut(s) 157, 433, 1133, 1323, 1806
FalI AAGNNNNNCTT 2 cut(s) 1712, 1744
FaqI GGGAC 1 cut(s) 271
FatI CATG 5 cut(s) 153, 429, 1129, 1319, 1802
FauI CCCGC 2 cut(s) 652, 1660
FblI GTMKAC 2 cut(s) 600, 753
Fnu4HI GCNGC 7 cut(s) 41, 44, 60, 648, 783, 1547, 1756
FokI GGATG 4 cut(s) 151, 1343, 1475, 1616
Fsp4HI GCNGC 7 cut(s) 41, 44, 60, 648, 783, 1547, 1756
FspBI CTAG 2 cut(s) 1422, 1524
GlaI GCGC 3 cut(s) 227, 473, 1759
GluI GCNGC 7 cut(s) 41, 44, 60, 648, 783, 1547, 1756
GsaI CCCAGC 1 cut(s) 1755
HaeII RGCGCY 1 cut(s) 1761
HaeIII GGCC 2 cut(s) 1228, 1692
HapII CCGG 3 cut(s) 899, 905, 1696
HgaI GACGC 1 cut(s) 463
HhaI GCGC 3 cut(s) 228, 474, 1760
Hin1II CATG 5 cut(s) 157, 433, 1133, 1323, 1806
Hin6I GCGC 3 cut(s) 226, 472, 1758
HinP1I GCGC 3 cut(s) 226, 472, 1758
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 8 cut(s) 491, 637, 908, 976, 1003, 1491, 1607, 1781
HpaII CCGG 3 cut(s) 899, 905, 1696
HphI GGTGA 3 cut(s) 524, 601, 815
Hpy166II GTNNAC 5 cut(s) 252, 601, 708, 754, 896
Hpy188I TCNGA 9 cut(s) 81, 479, 636, 838, 850, 859, 873, 1402, 1469
Hpy188III TCNNGA 8 cut(s) 34, 218, 591, 731, 1184, 1381, 1488, 1793
Hpy8I GTNNAC 5 cut(s) 252, 601, 708, 754, 896
HpyAV CCTTC 5 cut(s) 854, 1129, 1218, 1241, 1271
HpyCH4III ACNGT 7 cut(s) 161, 277, 970, 1158, 1305, 1352, 1744
HpyCH4IV ACGT 2 cut(s) 885, 1188
HpyCH4V TGCA 9 cut(s) 62, 104, 433, 529, 776, 782, 992, 1565, 1806
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 535, 656, 773, 782, 1331, 1426, 1637
HpyF3I CTNAG 5 cut(s) 55, 167, 673, 856, 1326
HpySE526I ACGT 2 cut(s) 885, 1188
Hsp92II CATG 5 cut(s) 157, 433, 1133, 1323, 1806
HspAI GCGC 3 cut(s) 226, 472, 1758
Kzo9I GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
LmnI GCTCC 3 cut(s) 828, 1059, 1773
Lsp1109I GCAGC 7 cut(s) 30, 46, 52, 634, 794, 1558, 1767
LweI GCATC 3 cut(s) 280, 1321, 1808
MaeI CTAG 2 cut(s) 1422, 1524
MaeII ACGT 2 cut(s) 885, 1188
MaeIII GTNAC 6 cut(s) 161, 277, 317, 881, 1042, 1368
MalI GATC 7 cut(s) 222, 240, 303, 816, 919, 1749, 1791
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
MboII GAAGA 5 cut(s) 23, 632, 1157, 1158, 1735
MfeI CAATTG 2 cut(s) 372, 1768
MflI RGATCY 3 cut(s) 301, 917, 1747
MlsI TGGCCA 1 cut(s) 1692
MluNI TGGCCA 1 cut(s) 1692
MlyI GAGTC 2 cut(s) 917, 970
MmeI TCCRAC 2 cut(s) 816, 1492
MnlI CCTC 9 cut(s) 117, 351, 863, 1240, 1275, 1321, 1432, 1453, 1630
Mox20I TGGCCA 1 cut(s) 1692
MscI TGGCCA 1 cut(s) 1692
MseI TTAA 4 cut(s) 422, 699, 792, 1079
MslI CAYNNNNRTG 1 cut(s) 1410
Msp20I TGGCCA 1 cut(s) 1692
MspA1I CMGCKG 5 cut(s) 43, 346, 647, 785, 1346
MspI CCGG 3 cut(s) 899, 905, 1696
MunI CAATTG 2 cut(s) 372, 1768
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 8 cut(s) 65, 535, 656, 773, 782, 1331, 1426, 1637
NdeII GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
NlaIII CATG 5 cut(s) 157, 433, 1133, 1323, 1806
NlaIV GGNNCC 4 cut(s) 903, 919, 1392, 1749
NmuCI GTSAC 1 cut(s) 1368
PfeI GAWTC 6 cut(s) 491, 637, 1003, 1491, 1607, 1781
PkrI GCNGC 7 cut(s) 42, 45, 61, 649, 784, 1548, 1757
Ple19I CGATCG 1 cut(s) 1792
PleI GAGTC 2 cut(s) 916, 970
PpsI GAGTC 2 cut(s) 916, 970
PpuMI RGGWCCY 1 cut(s) 1441
PshBI ATTAAT 2 cut(s) 699, 792
PsiI TTATAA 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 1441
PspFI CCCAGC 1 cut(s) 1751
PspN4I GGNNCC 4 cut(s) 903, 919, 1392, 1749
PspPI GGNCC 4 cut(s) 157, 1049, 1227, 1441
PspPPI RGGWCCY 1 cut(s) 1441
PsuI RGATCY 3 cut(s) 301, 917, 1747
PvuI CGATCG 1 cut(s) 1792
PvuII CAGCTG 2 cut(s) 43, 785
RsaI GTAC 5 cut(s) 620, 988, 1105, 1354, 1709
RsaNI GTAC 5 cut(s) 619, 987, 1104, 1353, 1708
RseI CAYNNNNRTG 1 cut(s) 1410
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 4 cut(s) 422, 699, 792, 1079
SatI GCNGC 7 cut(s) 41, 44, 60, 648, 783, 1547, 1756
Sau3AI GATC 7 cut(s) 220, 238, 301, 814, 917, 1747, 1789
Sau96I GGNCC 4 cut(s) 157, 1049, 1227, 1441
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 2 cut(s) 917, 970
SfaNI GCATC 3 cut(s) 280, 1321, 1808
SfcI CTRYAG 1 cut(s) 505
SgrAI CRCCGGYG 1 cut(s) 1695
SinI GGWCC 3 cut(s) 157, 1049, 1441
SmiMI CAYNNNNRTG 1 cut(s) 1410
SsiI CCGC 5 cut(s) 344, 645, 1062, 1346, 1667
SspMI CTAG 2 cut(s) 1422, 1524
StyI CCWWGG 1 cut(s) 1537
TaaI ACNGT 7 cut(s) 161, 277, 970, 1158, 1305, 1352, 1744
TaiI ACGT 2 cut(s) 888, 1191
TaqI TCGA 5 cut(s) 288, 600, 796, 1788, 1792
TatI WGTACW 1 cut(s) 1103
TfiI GAWTC 6 cut(s) 491, 637, 1003, 1491, 1607, 1781
Tru1I TTAA 4 cut(s) 422, 699, 792, 1079
Tru9I TTAA 4 cut(s) 422, 699, 792, 1079
TscAI CASTG 3 cut(s) 259, 778, 1621
TseFI GTSAC 1 cut(s) 1368
TseI GCWGC 7 cut(s) 40, 43, 59, 647, 782, 1546, 1755
Tsp45I GTSAC 1 cut(s) 1368
TspDTI ATGAA 5 cut(s) 418, 537, 1260, 1620, 1641
TspGWI ACGGA 2 cut(s) 1155, 1451
TspRI CASTG 3 cut(s) 259, 778, 1621
VpaK11BI GGWCC 3 cut(s) 157, 1049, 1441
VspI ATTAAT 2 cut(s) 699, 792
XagI CCTNNNNNAGG 2 cut(s) 1234, 1448
XapI RAATTY 6 cut(s) 75, 189, 244, 409, 759, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 1588
XmiI GTMKAC 2 cut(s) 600, 753
XspI CTAG 2 cut(s) 1422, 1524
ZrmI AGTACT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.