Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

8150015 .. 8150333

Gene Structure 319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13563.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCCAATCAGAAGGAGACGAAACGACGTCGCTTCATGGCGTCGTGCCGCGGCCGCGTCTGACTTGGTTCCACAACCACCGCCACCGCCAACTCCGCCGGAAAAGCAAAGGGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTTTGGAAGGTGGCGGCGCCGTACTGGTCCTCCTCCGACAAGGGCCAGGCGAGGATGGGGAAAAAGACCATTTGCACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

76

Amino Acids

8.54

Weight (kDa)

11.21

Isoelectric Point (pI)

94.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	160
AccII	CGCG	2 cut(s)	50, 56
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	7 cut(s)	48, 50, 54, 80, 86, 95, 158
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	3 cut(s)	27, 40, 161
AfaI	GTAC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	2 cut(s)	51, 187
ApeKI	GCWGC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	171, 187
AvaII	GGWCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	5 cut(s)	48, 51, 54, 134, 159
BlsI	GCNGC	5 cut(s)	49, 52, 55, 135, 160
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 187
BmiI	GGNNCC	2 cut(s)	69, 162
BmrFI	CCNGG	1 cut(s)	191
BsaHI	GRCGYC	3 cut(s)	27, 40, 161
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse1I	ACTGG	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	166
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	50, 56
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	53, 189
BshNI	GGYRCC	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	98, 139
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	53, 189
Bsp13I	TCCGGA	1 cut(s)	138
BspACI	CCGC	7 cut(s)	48, 50, 54, 80, 86, 95, 158
BspANI	GGCC	2 cut(s)	53, 189
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	50, 56
BspLI	GGNNCC	2 cut(s)	69, 162
BspT107I	GGYRCC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	48
BssNI	GRCGYC	3 cut(s)	27, 40, 161
Bst2UI	CCWGG	1 cut(s)	191
BstACI	GRCGYC	3 cut(s)	27, 40, 161
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	50, 56
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 94, 103, 133
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	2 cut(s)	50, 56
BstV1I	GCAGC	1 cut(s)	120
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	53, 189
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	133
CciNI	GCGGCCGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	171, 187
Cfr42I	CCGCGG	1 cut(s)	51
CseI	GACGC	3 cut(s)	29, 45, 139
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	2 cut(s)	53, 189
CviKI_1	RGCY	2 cut(s)	53, 189
CviQI	GTAC	1 cut(s)	166
DinI	GGCGCC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	189
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	1 cut(s)	39
FaiI	YATR	1 cut(s)	37
FatI	CATG	1 cut(s)	35
Fnu4HI	GCNGC	5 cut(s)	48, 51, 54, 134, 159
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	48, 51, 54, 134, 159
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	48, 51, 54, 134, 159
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	53, 189
HapII	CCGG	2 cut(s)	98, 139
HgaI	GACGC	3 cut(s)	29, 45, 139
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	3 cut(s)	27, 40, 161
Hin1II	CATG	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	98, 139
Hpy188I	TCNGA	4 cut(s)	11, 61, 121, 181
Hpy188III	TCNNGA	1 cut(s)	139
Hpy99I	CGWCG	3 cut(s)	29, 32, 45
HpyAV	CCTTC	2 cut(s)	6, 145
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	127, 219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 94, 103, 133
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	3 cut(s)	27, 40, 161
Hsp92II	CATG	1 cut(s)	39
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Kpn2I	TCCGGA	1 cut(s)	138
KspI	CCGCGG	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	111, 152, 154, 176, 203
Lsp1109I	GCAGC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	106, 184, 187, 189
MroI	TCCGGA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	98, 139
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	50, 56
MwoI	GCNNNNNNNGC	4 cut(s)	53, 94, 103, 133
NarI	GGCGCC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	2 cut(s)	69, 162
NotI	GCGGCCGC	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	49, 52, 55, 135, 160
PluTI	GGCGCC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	69, 162
PspPI	GGNCC	2 cut(s)	171, 187
PstNI	CAGNNNCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	51
SatI	GCNGC	5 cut(s)	48, 51, 54, 134, 159
Sau96I	GGNCC	2 cut(s)	171, 187
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	2 cut(s)	30, 156
SfoI	GGCGCC	1 cut(s)	162
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	171
SsiI	CCGC	7 cut(s)	48, 50, 54, 80, 86, 95, 158
SspDI	GGCGCC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	30
TauI	GCSGC	4 cut(s)	50, 53, 56, 161
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.