Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8226687.1

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 506

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8226687.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcccaccaccactcgcaaccgaaactccgttagaagaagaagaaacgacgccgcttcatggcgtcgttctgctgcggcgtccgactctgtaccaccgccaccacctgctcctccaaccccggaaaagcaaagagagggttcggatttgcagacgctgctccggagattctggaaggtggcggcgccgtactggtcctccgacgacaaagtccaggccaggatgcagctgggagcagtcttccttctcactctcgccaccaccgggatcagcgtcggcttcagttttctgggccgggacttctacaatgctcttgccagtcagttctcctctgtctctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

11.32

Isoelectric Point (pI)

70.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	184
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	54, 77, 98, 182
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	4 cut(s)	51, 64, 80, 185
AfaI	GTAC	2 cut(s)	93, 191
AfiI	CCNNNNNNNGG	2 cut(s)	60, 264
AjnI	CCWGG	2 cut(s)	213, 218
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	2 cut(s)	216, 292
ApeKI	GCWGC	3 cut(s)	74, 157, 226
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	195, 292
AsuC2I	CCSGG	3 cut(s)	122, 265, 296
AvaII	GGWCC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	61, 144, 238
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	215, 220
BcnI	CCSGG	3 cut(s)	122, 265, 296
BcoDI	GTCTC	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	6 cut(s)	54, 75, 78, 158, 183, 227
BlsI	GCNGC	6 cut(s)	55, 76, 79, 159, 184, 228
Bme1390I	CCNGG	5 cut(s)	122, 215, 220, 265, 296
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	195, 292
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	5 cut(s)	122, 215, 220, 265, 296
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	232
BpuMI	CCSGG	3 cut(s)	122, 265, 296
BsaHI	GRCGYC	4 cut(s)	51, 64, 80, 185
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 264
Bse1I	ACTGG	2 cut(s)	197, 318
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	215, 220
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	60, 264
BseNI	ACTGG	2 cut(s)	197, 318
BseRI	GAGGAG	2 cut(s)	102, 319
BseXI	GCAGC	3 cut(s)	61, 144, 238
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	218, 294
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	122, 163, 264, 295
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	60, 264
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	218, 294
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	4 cut(s)	54, 77, 98, 182
BspANI	GGCC	2 cut(s)	218, 294
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	197, 318
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	4 cut(s)	51, 64, 80, 185
Bst2UI	CCWGG	2 cut(s)	215, 220
BstACI	GRCGYC	4 cut(s)	51, 64, 80, 185
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	215, 220
BstSCI	CCNGG	5 cut(s)	120, 213, 218, 263, 294
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	61, 144, 238
BstV2I	GAAGAC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	218, 294
BtsCI	GGATG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	195, 292
CseI	GACGC	5 cut(s)	53, 59, 69, 163, 262
Csp6I	GTAC	2 cut(s)	92, 190
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	4 cut(s)	218, 229, 279, 294
CviKI_1	RGCY	4 cut(s)	218, 229, 279, 294
CviQI	GTAC	2 cut(s)	92, 190
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	213, 218
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
FaeI	CATG	1 cut(s)	63
FaiI	YATR	1 cut(s)	61
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	6 cut(s)	54, 75, 78, 158, 183, 227
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	6 cut(s)	54, 75, 78, 158, 183, 227
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	6 cut(s)	54, 75, 78, 158, 183, 227
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	218, 294
HapII	CCGG	4 cut(s)	122, 163, 264, 295
HgaI	GACGC	5 cut(s)	53, 59, 69, 163, 262
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	4 cut(s)	51, 64, 80, 185
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	86, 168
HpaII	CCGG	4 cut(s)	122, 163, 264, 295
Hpy188I	TCNGA	3 cut(s)	85, 145, 202
Hpy188III	TCNNGA	2 cut(s)	163, 172
Hpy99I	CGWCG	4 cut(s)	53, 69, 206, 278
HpyAV	CCTTC	2 cut(s)	169, 254
HpyCH4V	TGCA	2 cut(s)	151, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
Hsp92I	GRCGYC	4 cut(s)	51, 64, 80, 185
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	115, 165, 233
Lsp1109I	GCAGC	3 cut(s)	61, 144, 238
LweI	GCATC	1 cut(s)	213
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	48, 51, 54, 232
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	3 cut(s)	108, 140, 225
MnlI	CCTC	4 cut(s)	123, 130, 208, 340
MroI	TCCGGA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	4 cut(s)	122, 163, 264, 295
MspR9I	CCNGG	5 cut(s)	122, 215, 220, 265, 296
MvaI	CCWGG	2 cut(s)	215, 220
MwoI	GCNNNNNNNGC	1 cut(s)	157
NarI	GGCGCC	1 cut(s)	185
NciI	CCSGG	3 cut(s)	122, 265, 296
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	55, 76, 79, 159, 184, 228
PleI	GAGTC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	213, 218
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	2 cut(s)	213, 218
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	195, 292
PstNI	CAGNNNCTG	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	93, 191
RsaNI	GTAC	2 cut(s)	92, 190
SatI	GCNGC	6 cut(s)	54, 75, 78, 158, 183, 227
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	195, 292
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	5 cut(s)	122, 215, 220, 265, 296
SetI	ASST	3 cut(s)	109, 180, 231
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	341
SfoI	GGCGCC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	195
SsiI	CCGC	4 cut(s)	54, 77, 98, 182
SspDI	GGCGCC	1 cut(s)	184
StyD4I	CCNGG	5 cut(s)	120, 213, 218, 263, 294
TauI	GCSGC	3 cut(s)	56, 80, 185
TfiI	GAWTC	1 cut(s)	168
TseI	GCWGC	3 cut(s)	74, 157, 226
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	19
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.