RchiOBHm_Chr1g0347801

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001312
Physical Location & Seq
Forward (+)
40478913 .. 40483195
4283 bp
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UTR
Exon/CDS
Intron
PRQ57390

Sequence Viewer

Length: 339 bp
ATGCAACATTTGCTTCAATGCTTCAAAAGTGCTTTTGAGAATCTGACTCAATTGTTGATAGCTTCCAGAAATCTTGAGTTTTTCACCAGTGGATACTGCTATCTTATTCAAATTCTTCCTGCTGCTGCCGTTGCTCCTATGTACTTCTCTAGAAAAATTGAGCTTGGTGTCATTAATCAGTCAGTATCGGCTTTTAATCATATCCTGGGGGACTTCTCCCTCACCGTGTACCAATTTCAGTCTATAAGTGCATTTTCAGCAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGCCATCTGACCCTGCAGAAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

112

Amino Acids

12.73

Weight (kDa)

5.41

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 111, 281
AfaI GTAC 2 cut(s) 143, 230
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 17, 25, 110
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 62, 163, 306
AluI AGCT 3 cut(s) 62, 163, 306
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 2 cut(s) 111, 281
AseI ATTAAT 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 76, 214
BbvI GCAGC 2 cut(s) 109, 112
BccI CCATC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 86
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 109, 112
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 330
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 329
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 4 cut(s) 10, 131, 257, 312
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 109, 112
BsuI GTATCC 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 94
Csp6I GTAC 2 cut(s) 142, 229
CviJI RGCY 4 cut(s) 62, 163, 191, 306
CviKI_1 RGCY 4 cut(s) 62, 163, 191, 306
CviQI GTAC 2 cut(s) 142, 229
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 301
FaiI YATR 3 cut(s) 140, 201, 245
FaqI GGGAC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 123, 126
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 123, 126
HinfI GANTC 2 cut(s) 40, 46
HphI GGTGA 2 cut(s) 76, 214
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 45, 321
Hpy188III TCNNGA 3 cut(s) 66, 74, 150
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 4, 251, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 131, 257, 312
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 79, 100, 132, 191, 218
Lsp1109I GCAGC 2 cut(s) 109, 112
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 107
MfeI CAATTG 1 cut(s) 50
MluCI AATT 6 cut(s) 50, 111, 156, 233, 264, 281
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 1 cut(s) 230
MseI TTAA 2 cut(s) 174, 195
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 10, 131, 257, 312
NdeII GATC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PstI CTGCAG 1 cut(s) 330
RsaI GTAC 2 cut(s) 143, 230
RsaNI GTAC 2 cut(s) 142, 229
SaqAI TTAA 2 cut(s) 174, 195
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 206
SetI ASST 3 cut(s) 64, 165, 308
SfcI CTRYAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 6 cut(s) 50, 111, 156, 233, 264, 281
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 271
TasI AATT 6 cut(s) 50, 111, 156, 233, 264, 281
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 174, 195
Tru9I TTAA 2 cut(s) 174, 195
TscAI CASTG 1 cut(s) 94
TseI GCWGC 2 cut(s) 122, 125
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 94
VspI ATTAAT 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 2 cut(s) 111, 281
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.