Rmu_sc0022800.1_g000001

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022800.1
OG0001312
Physical Location & Seq
Reverse (-)
476 .. 3035
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022800.1_g000001.1.cds

Sequence Viewer

Length: 1245 bp
atgataatacaggctcaaagtcactgtgtctcactctgcttggcccatggctactctacccaccactcccatcgtcactttacactagtagtggcaccacccaggtttccatcactgcccacaatgcccaccaccactcgcaaccgaaactccgttagaagaagaagaaacgacgccgcttcatggcgtcgttctgctgcggcgtccgactctgtaccaccgccaccacctgctcctccaaccccggaaaagacgctgctccggagattctggaaggtggcggcgccgtactggtcctccgacgacaaagtccaggccaggatgcagctgggagcagtcttccttctcactctcgccaccaccgggatcagcgtcggcttcagttttctgggccgggacttctacaatgctcttgccaataaggaccaggagcaattcacgaagcaattgctttactacctgggtgcctttgctggtggaattccgatttttgtgttgcgggattatgcaagagaaactctttctttgaggtggagatcttggatgacgcgttattacattgaccgttacctgagcaaccaaacattttacagaattcaatcccaatcaatcattgataatccagatcagcgaattgttgatgatctaagttctttcacggggacagccctgtcattctctttaacactcttcaatgctgtgatagatctcatatcattcagtaacatcttatttggtatctatcctccgctgtttgttgttcttctagtatattcgattggtggaacagtgatcagtgtctttattggaaggggtttggtgacattaaacttcctgcaagagaaaaaggaagcagattttcgttatggacttgtgcgcgttcgagaaaatgctgaatcaatagctttctatagtggtgaagacaatgaaatgcaacttttgctgcaacgcttcaaaagtgcttttgagaatctaactcaattgttgatagcttcaagaaatcttgagtttttcaccagtggataccgctatcttattcaaattcttcctgctgctgtcgttgctcctatgtacttctctggaaaaattgagtttggtgtcattaatcagtcagtatctgcttttaatcatatcctgggggacttctcccttatcgtgtaccaatttcagtctataagcgcattttcagcagtaattgatcgacttggtacagtctctgtatccttttctcctcctctgctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

414

Amino Acids

46.78

Weight (kDa)

9.57

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
AasI GACNNNNNNGTC 2 cut(s) 308, 670
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 3 cut(s) 94, 283, 464
AccII CGCG 2 cut(s) 550, 879
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 7 cut(s) 177, 200, 221, 281, 499, 749, 1027
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 3 cut(s) 480, 594, 1041
AcuI CTGAAG 1 cut(s) 364
AcyI GRCGYC 4 cut(s) 174, 187, 203, 284
AfaI GTAC 5 cut(s) 216, 290, 1073, 1160, 1210
AfiI CCNNNNNNNGG 2 cut(s) 183, 363
AflIII ACRYGT 1 cut(s) 548
AgsI TTSAA 5 cut(s) 599, 694, 955, 996, 1040
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 6 cut(s) 101, 312, 317, 426, 459, 1134
AluBI AGCT 3 cut(s) 328, 905, 992
AluI AGCT 3 cut(s) 328, 905, 992
Alw26I GTCTC 2 cut(s) 34, 1219
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 2 cut(s) 1118, 1217
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 3 cut(s) 42, 315, 391
ApeKI GCWGC 5 cut(s) 197, 256, 325, 943, 1052
ApoI RAATTY 3 cut(s) 480, 594, 1041
AseI ATTAAT 1 cut(s) 1104
AspLEI GCGC 3 cut(s) 286, 879, 1181
AspS9I GGNCC 4 cut(s) 43, 294, 391, 424
AsuC2I CCSGG 3 cut(s) 245, 364, 395
AsuHPI GGTGA 3 cut(s) 832, 929, 1006
AvaII GGWCC 2 cut(s) 294, 424
BanI GGYRCC 3 cut(s) 94, 283, 464
BbsI GAAGAC 2 cut(s) 331, 927
BbvI GCAGC 5 cut(s) 184, 243, 337, 930, 1039
BccI CCATC 2 cut(s) 78, 118
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 6 cut(s) 103, 314, 319, 428, 461, 1136
BciVI GTATCC 2 cut(s) 1016, 1231
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 3 cut(s) 245, 364, 395
BcoDI GTCTC 2 cut(s) 34, 1219
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 2 cut(s) 86, 767
BfmI CTRYAG 2 cut(s) 910, 1241
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 2 cut(s) 1016, 1231
BglII AGATCT 2 cut(s) 536, 706
BisI GCNGC 8 cut(s) 177, 198, 201, 257, 282, 326, 944, 1053
BlsI GCNGC 8 cut(s) 178, 199, 202, 258, 283, 327, 945, 1054
Bme1390I CCNGG 9 cut(s) 103, 245, 314, 319, 364, 395, 428, 461, 1136
Bme18I GGWCC 2 cut(s) 294, 424
BmgT120I GGNCC 4 cut(s) 43, 294, 391, 424
BmiI GGNNCC 3 cut(s) 96, 285, 466
BmrFI CCNGG 9 cut(s) 103, 245, 314, 319, 364, 395, 428, 461, 1136
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 2 cut(s) 331, 927
Bpu10I CCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 3 cut(s) 245, 364, 395
BsaHI GRCGYC 4 cut(s) 174, 187, 203, 284
BsaJI CCNNGG 5 cut(s) 46, 101, 243, 460, 1135
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 363
Bse1I ACTGG 2 cut(s) 296, 1017
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 6 cut(s) 103, 314, 319, 428, 461, 1136
BseDI CCNNGG 5 cut(s) 46, 101, 243, 460, 1135
BseGI GGATG 2 cut(s) 327, 549
BseLI CCNNNNNNNGG 2 cut(s) 183, 363
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 296, 1017
BseRI GAGGAG 3 cut(s) 225, 1221, 1224
BseXI GCAGC 5 cut(s) 184, 243, 337, 930, 1039
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 550, 879
BshFI GGCC 3 cut(s) 44, 317, 393
BshNI GGYRCC 3 cut(s) 94, 283, 464
BsiSI CCGG 4 cut(s) 245, 262, 363, 394
BslFI GGGAC 3 cut(s) 410, 676, 1154
BslI CCNNNNNNNGG 2 cut(s) 183, 363
BsmAI GTCTC 2 cut(s) 34, 1219
BsmFI GGGAC 3 cut(s) 410, 676, 1154
BsnI GGCC 3 cut(s) 44, 317, 393
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 7 cut(s) 177, 200, 221, 281, 499, 749, 1027
BspANI GGCC 3 cut(s) 44, 317, 393
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 2 cut(s) 550, 879
BspLI GGNNCC 3 cut(s) 96, 285, 466
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 374
BspT107I GGYRCC 3 cut(s) 94, 283, 464
BsrI ACTGG 2 cut(s) 296, 1017
BssECI CCNNGG 5 cut(s) 46, 101, 243, 460, 1135
BssMI GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
BssNI GRCGYC 4 cut(s) 174, 187, 203, 284
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 6 cut(s) 103, 314, 319, 428, 461, 1136
Bst4CI ACNGT 4 cut(s) 26, 566, 790, 1213
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 4 cut(s) 174, 187, 203, 284
BstAPI GCANNNNNTGC 1 cut(s) 940
BstDEI CTNAG 2 cut(s) 572, 647
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 327, 549
BstFNI CGCG 2 cut(s) 550, 879
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 3 cut(s) 286, 879, 1181
BstKTI GATC 7 cut(s) 369, 539, 628, 646, 709, 795, 1201
BstMAI GTCTC 2 cut(s) 34, 1219
BstMBI GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
BstMWI GCNNNNNNNGC 4 cut(s) 124, 940, 1061, 1187
BstNI CCWGG 6 cut(s) 103, 314, 319, 428, 461, 1136
BstSCI CCNGG 9 cut(s) 101, 243, 312, 317, 362, 393, 426, 459, 1134
BstSFI CTRYAG 2 cut(s) 910, 1241
BstUI CGCG 2 cut(s) 550, 879
BstV1I GCAGC 5 cut(s) 184, 243, 337, 930, 1039
BstV2I GAAGAC 2 cut(s) 331, 927
BstX2I RGATCY 2 cut(s) 536, 706
BstYI RGATCY 2 cut(s) 536, 706
BsuI GTATCC 2 cut(s) 1016, 1231
BsuRI GGCC 3 cut(s) 44, 317, 393
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 327, 549
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 5 cut(s) 22, 113, 795, 802, 1024
BveI ACCTGC 1 cut(s) 238
CaiI CAGNNNCTG 2 cut(s) 1118, 1217
CfoI GCGC 3 cut(s) 286, 879, 1181
Cfr13I GGNCC 4 cut(s) 43, 294, 391, 424
CseI GACGC 6 cut(s) 176, 182, 192, 262, 361, 556
Csp6I GTAC 5 cut(s) 215, 289, 1072, 1159, 1209
CviAII CATG 2 cut(s) 47, 183
CviQI GTAC 5 cut(s) 215, 289, 1072, 1159, 1209
DdeI CTNAG 2 cut(s) 572, 647
DinI GGCGCC 1 cut(s) 285
DpnI GATC 7 cut(s) 368, 538, 627, 645, 708, 794, 1200
DpnII GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
DrdI GACNNNNNNGTC 2 cut(s) 308, 670
DseDI GACNNNNNNGTC 2 cut(s) 308, 670
Eam1104I CTCTTC 1 cut(s) 695
EarI CTCTTC 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 294, 424
Eco57I CTGAAG 1 cut(s) 364
EcoRI GAATTC 2 cut(s) 480, 594
EcoRII CCWGG 6 cut(s) 101, 312, 317, 426, 459, 1134
EcoT14I CCWWGG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 50, 186
FaqI GGGAC 3 cut(s) 410, 676, 1154
FatI CATG 2 cut(s) 46, 182
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 8 cut(s) 177, 198, 201, 257, 282, 326, 944, 1053
FokI GGATG 2 cut(s) 334, 556
Fsp4HI GCNGC 8 cut(s) 177, 198, 201, 257, 282, 326, 944, 1053
FspBI CTAG 2 cut(s) 86, 767
GlaI GCGC 3 cut(s) 285, 878, 1180
GluI GCNGC 8 cut(s) 177, 198, 201, 257, 282, 326, 944, 1053
GsaI CCCAGC 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 44, 317, 393
HapII CCGG 4 cut(s) 245, 262, 363, 394
HgaI GACGC 6 cut(s) 176, 182, 192, 262, 361, 556
HhaI GCGC 3 cut(s) 286, 879, 1181
Hin1I GRCGYC 4 cut(s) 174, 187, 203, 284
Hin1II CATG 2 cut(s) 50, 186
Hin6I GCGC 3 cut(s) 284, 877, 1179
HinP1I GCGC 3 cut(s) 284, 877, 1179
HinfI GANTC 4 cut(s) 209, 267, 896, 970
HpaII CCGG 4 cut(s) 245, 262, 363, 394
HphI GGTGA 3 cut(s) 832, 929, 1006
Hpy166II GTNNAC 1 cut(s) 1159
Hpy188I TCNGA 3 cut(s) 208, 301, 486
Hpy188III TCNNGA 8 cut(s) 262, 271, 439, 623, 884, 996, 1004, 1080
Hpy8I GTNNAC 1 cut(s) 1159
Hpy99I CGWCG 4 cut(s) 176, 192, 305, 377
HpyAV CCTTC 3 cut(s) 268, 353, 804
HpyCH4III ACNGT 4 cut(s) 26, 566, 790, 1213
HpyCH4V TGCA 5 cut(s) 325, 509, 838, 934, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 940, 1061, 1187
HpyF3I CTNAG 2 cut(s) 572, 647
Hsp92I GRCGYC 4 cut(s) 174, 187, 203, 284
Hsp92II CATG 2 cut(s) 50, 186
HspAI GCGC 3 cut(s) 284, 877, 1179
KasI GGCGCC 1 cut(s) 283
Kpn2I TCCGGA 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
LmnI GCTCC 5 cut(s) 238, 264, 332, 430, 1069
Lsp1109I GCAGC 5 cut(s) 184, 243, 337, 930, 1039
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 86, 767
MaeIII GTNAC 5 cut(s) 20, 74, 566, 722, 820
MalI GATC 7 cut(s) 368, 538, 627, 645, 708, 794, 1200
MboI GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
MboII GAAGA 8 cut(s) 171, 174, 177, 331, 682, 755, 932, 1037
MfeI CAATTG 2 cut(s) 446, 980
MflI RGATCY 2 cut(s) 536, 706
MluI ACGCGT 1 cut(s) 548
Mly113I GGCGCC 1 cut(s) 284
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 231, 263, 324
MnlI CCTC 6 cut(s) 246, 307, 522, 756, 1242, 1245
MroI TCCGGA 1 cut(s) 261
MseI TTAA 4 cut(s) 683, 827, 1104, 1125
MspA1I CMGCKG 2 cut(s) 328, 751
MspI CCGG 4 cut(s) 245, 262, 363, 394
MspR9I CCNGG 9 cut(s) 103, 245, 314, 319, 364, 395, 428, 461, 1136
MunI CAATTG 2 cut(s) 446, 980
MvaI CCWGG 6 cut(s) 103, 314, 319, 428, 461, 1136
MvnI CGCG 2 cut(s) 550, 879
MwoI GCNNNNNNNGC 4 cut(s) 124, 940, 1061, 1187
NarI GGCGCC 1 cut(s) 284
NciI CCSGG 3 cut(s) 245, 364, 395
NcoI CCATGG 1 cut(s) 46
NdeII GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
NlaIII CATG 2 cut(s) 50, 186
NlaIV GGNNCC 3 cut(s) 96, 285, 466
NmuCI GTSAC 3 cut(s) 20, 74, 820
PaqCI CACCTGC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 267, 896, 970
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 8 cut(s) 178, 199, 202, 258, 283, 327, 945, 1054
PleI GAGTC 1 cut(s) 203
PluTI GGCGCC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 1104
Psp6I CCWGG 6 cut(s) 101, 312, 317, 426, 459, 1134
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 6 cut(s) 101, 312, 317, 426, 459, 1134
PspN4I GGNNCC 3 cut(s) 96, 285, 466
PspPI GGNCC 4 cut(s) 43, 294, 391, 424
PstNI CAGNNNCTG 2 cut(s) 1118, 1217
PsuI RGATCY 2 cut(s) 536, 706
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 5 cut(s) 216, 290, 1073, 1160, 1210
RsaNI GTAC 5 cut(s) 215, 289, 1072, 1159, 1209
SaqAI TTAA 4 cut(s) 683, 827, 1104, 1125
SatI GCNGC 8 cut(s) 177, 198, 201, 257, 282, 326, 944, 1053
Sau3AI GATC 7 cut(s) 366, 536, 625, 643, 706, 792, 1198
Sau96I GGNCC 4 cut(s) 43, 294, 391, 424
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 9 cut(s) 103, 245, 314, 319, 364, 395, 428, 461, 1136
SetI ASST 9 cut(s) 107, 232, 279, 330, 462, 533, 573, 907, 994
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 2 cut(s) 910, 1241
SfoI GGCGCC 1 cut(s) 285
SinI GGWCC 2 cut(s) 294, 424
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SpeI ACTAGT 1 cut(s) 85
SsiI CCGC 7 cut(s) 177, 200, 221, 281, 499, 749, 1027
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 2 cut(s) 86, 767
StyD4I CCNGG 9 cut(s) 101, 243, 312, 317, 362, 393, 426, 459, 1134
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 4 cut(s) 26, 566, 790, 1213
TaqI TCGA 3 cut(s) 776, 883, 1201
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 3 cut(s) 179, 203, 284
TfiI GAWTC 3 cut(s) 267, 896, 970
Tru1I TTAA 4 cut(s) 683, 827, 1104, 1125
Tru9I TTAA 4 cut(s) 683, 827, 1104, 1125
TscAI CASTG 5 cut(s) 29, 120, 795, 802, 1024
TseFI GTSAC 3 cut(s) 20, 74, 820
TseI GCWGC 5 cut(s) 197, 256, 325, 943, 1052
Tsp45I GTSAC 3 cut(s) 20, 74, 820
TspDTI ATGAA 2 cut(s) 171, 942
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 5 cut(s) 29, 120, 795, 802, 1024
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 294, 424
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 3 cut(s) 480, 594, 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 2 cut(s) 86, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.