Rmu_sc0022800.1_g000003

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022800.1
OG0001312
Physical Location & Seq
Reverse (-)
13536 .. 16287
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022800.1_g000003.1.cds

Sequence Viewer

Length: 1152 bp
atgacattaccttacattgcccaatcaaattccttcgattcaaaagaccagtttccattttacaccgagattgtctctgtaccgccaccaacacgtgctcctccaacccgggaaaagattcttgtttggttgaatctgggtggcagcaaagagagggtttggatttgcaatgcccttgccaataaggaccaagagcagttcatgaagcaactgctttactacctgggtgcctttgctggtggaattccgatttttgtgttgcggaattatgcaagagaaactctttctttgaggtggagatcttggatggagtgttattacattgatcgttacctgagcaaccaaacattttacagaattcaatcccaatcaatcattgataatccagatcagcgaattgttgatgatctaagttctttcacggggacagccctgtcattctctttaacactcttcaatgctgtgatagatctcatatcattcagtaacatcttatttggtatctatcctccgctgtttgttgttcttctagtatattcgattggtggaacagtgatcagtgtctttattggaaggggtttggtgacattaaactttctgcaagagagaaaggaagcagattttcgttatggacttgtgcacgttggagaaaatgctgaatcaatagctttctatagtggtgaagacattgaaatgcaacttttgctgcaacgcttcaaaattgcttttgagaatctaactagtttctcttcattaacctctttggctcacttgaacttgtctcacaacaacttgtccggaagaattccttcaggcagtcaacttcaaacatttgatgattcatccatttacaagggcaatccattcttgtgtggggttcctctttcaactgtctgcccgggagatagtgcactcgcaccagctgaccctgacgatgatgatcataatgatgacgatactgatgagaatgggaagtttggtatctatgttagcgctgtcctcggcttcatcataggcttctggagtgtctgtggcacattggttagaaagaaatcatggaggtatgcctattttcgtttctttgataacataaaggagaaggcagcattagcaattgcattgagagtggctcgttggcaaaggaagacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

383

Amino Acids

43.36

Weight (kDa)

5.68

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 797
AciI CCGC 3 cut(s) 83, 262, 512
AcsI RAATTY 4 cut(s) 28, 243, 357, 804
AcuI CTGAAG 1 cut(s) 795
AcvI CACGTG 1 cut(s) 95
AfaI GTAC 1 cut(s) 81
AfeI AGCGCT 1 cut(s) 994
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 9 cut(s) 42, 133, 362, 457, 692, 718, 775, 827, 888
AhlI ACTAGT 1 cut(s) 740
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 668, 923
AluI AGCT 2 cut(s) 668, 923
Alw21I GWGCWC 3 cut(s) 100, 642, 913
Alw26I GTCTC 2 cut(s) 79, 786
Alw44I GTGCAC 2 cut(s) 638, 909
Ama87I CYCGRG 2 cut(s) 108, 898
Aor13HI TCCGGA 1 cut(s) 797
Aor51HI AGCGCT 1 cut(s) 994
ApaLI GTGCAC 2 cut(s) 638, 909
ApeKI GCWGC 3 cut(s) 144, 706, 1103
ApoI RAATTY 4 cut(s) 28, 243, 357, 804
Asp700I GAANNNNTTC 2 cut(s) 117, 808
AspLEI GCGC 1 cut(s) 995
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 4 cut(s) 109, 110, 899, 900
AsuHPI GGTGA 2 cut(s) 595, 692
AvaI CYCGRG 2 cut(s) 108, 898
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 2 cut(s) 642, 913
BanI GGYRCC 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 3 cut(s) 100, 642, 913
BbvI GCAGC 3 cut(s) 156, 693, 1115
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 2 cut(s) 555, 940
BcnI CCSGG 4 cut(s) 109, 110, 899, 900
BcoDI GTCTC 2 cut(s) 79, 786
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 2 cut(s) 530, 741
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 1 cut(s) 996
BglII AGATCT 2 cut(s) 299, 469
BisI GCNGC 3 cut(s) 145, 707, 1104
BlsI GCNGC 3 cut(s) 146, 708, 1105
Bme1390I CCNGG 5 cut(s) 109, 110, 224, 899, 900
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 108, 898
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 229, 879
BmrFI CCNGG 5 cut(s) 109, 110, 224, 899, 900
BpiI GAAGAC 1 cut(s) 690
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 1114, 1146
BpmI CTGGAG 1 cut(s) 1042
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 4 cut(s) 109, 110, 899, 900
BsaAI YACGTR 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 108, 223, 898, 1000
BsaWI WCCGGW 1 cut(s) 797
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 1015, 1045
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 2 cut(s) 15, 175
Bse8I GATNNNNATC 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 797
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 4 cut(s) 108, 223, 898, 1000
BseGI GGATG 2 cut(s) 312, 842
BseJI GATNNNNATC 1 cut(s) 939
BseMI GCAATG 2 cut(s) 15, 175
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 2 cut(s) 642, 913
BseXI GCAGC 3 cut(s) 156, 693, 1115
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 3 cut(s) 100, 642, 913
BsiHKCI CYCGRG 2 cut(s) 108, 898
BsiSI CCGG 3 cut(s) 109, 798, 899
BslFI GGGAC 1 cut(s) 439
BsmAI GTCTC 2 cut(s) 79, 786
BsmFI GGGAC 1 cut(s) 439
BsoBI CYCGRG 2 cut(s) 108, 898
Bsp1286I GDGCHC 3 cut(s) 100, 642, 913
Bsp13I TCCGGA 1 cut(s) 797
Bsp143I GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
BspACI CCGC 3 cut(s) 83, 262, 512
BspCNI CTCAG 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 797
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 229, 879
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 15, 175
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 4 cut(s) 108, 223, 898, 1000
BssMI GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 553, 892
Bst6I CTCTTC 2 cut(s) 458, 754
BstAPI GCANNNNNTGC 1 cut(s) 703
BstBAI YACGTR 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 335, 410
BstF5I GGATG 2 cut(s) 312, 842
BstH2I RGCGCY 1 cut(s) 996
BstHHI GCGC 1 cut(s) 995
BstKTI GATC 7 cut(s) 302, 328, 391, 409, 472, 558, 943
BstMAI GTCTC 2 cut(s) 79, 786
BstMBI GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
BstMWI GCNNNNNNNGC 2 cut(s) 703, 1109
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 5 cut(s) 107, 108, 222, 897, 898
BstSFI CTRYAG 1 cut(s) 673
BstSLI GKGCMC 2 cut(s) 642, 913
BstV1I GCAGC 3 cut(s) 156, 693, 1115
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 299, 469
BstYI RGATCY 2 cut(s) 299, 469
BtsCI GGATG 2 cut(s) 312, 842
BtsIMutI CAGTG 2 cut(s) 558, 565
CciI TCATGA 1 cut(s) 201
CfoI GCGC 1 cut(s) 995
Cfr13I GGNCC 1 cut(s) 187
Cfr9I CCCGGG 2 cut(s) 108, 898
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 202, 1056
CviJI RGCY 7 cut(s) 431, 668, 767, 923, 1005, 1017, 1130
CviKI_1 RGCY 7 cut(s) 431, 668, 767, 923, 1005, 1017, 1130
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 335, 410
DpnI GATC 7 cut(s) 301, 327, 390, 408, 471, 557, 942
DpnII GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 458, 754
EarI CTCTTC 2 cut(s) 458, 754
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 994
Eco57I CTGAAG 1 cut(s) 795
Eco72I CACGTG 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 108, 898
EcoRI GAATTC 3 cut(s) 243, 357, 804
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 205, 1059
FalI AAGNNNNNCTT 3 cut(s) 793, 825, 1132
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 201, 1055
FbaI TGATCA 2 cut(s) 555, 940
Fnu4HI GCNGC 3 cut(s) 145, 707, 1104
FokI GGATG 2 cut(s) 319, 829
Fsp4HI GCNGC 3 cut(s) 145, 707, 1104
FspBI CTAG 2 cut(s) 530, 741
GlaI GCGC 1 cut(s) 994
GluI GCNGC 3 cut(s) 145, 707, 1104
GsuI CTGGAG 1 cut(s) 1042
HaeII RGCGCY 1 cut(s) 996
HapII CCGG 3 cut(s) 109, 798, 899
HhaI GCGC 1 cut(s) 995
Hin1II CATG 2 cut(s) 205, 1059
Hin6I GCGC 1 cut(s) 993
HinP1I GCGC 1 cut(s) 993
HincII GTYRAC 1 cut(s) 821
HindII GTYRAC 1 cut(s) 821
HinfI GANTC 6 cut(s) 38, 118, 133, 659, 733, 839
HpaII CCGG 3 cut(s) 109, 798, 899
HphI GGTGA 2 cut(s) 595, 692
Hpy166II GTNNAC 3 cut(s) 640, 821, 911
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 202, 386, 798, 1021
Hpy8I GTNNAC 3 cut(s) 640, 821, 911
HpyAV CCTTC 4 cut(s) 43, 567, 819, 1093
HpyCH4III ACNGT 2 cut(s) 553, 892
HpyCH4IV ACGT 2 cut(s) 94, 642
HpyCH4V TGCA 8 cut(s) 168, 272, 601, 640, 697, 709, 911, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 703, 1109
HpyF3I CTNAG 2 cut(s) 335, 410
HpySE526I ACGT 2 cut(s) 94, 642
Hsp92II CATG 2 cut(s) 205, 1059
HspAI GCGC 1 cut(s) 993
Kpn2I TCCGGA 1 cut(s) 797
Ksp22I TGATCA 2 cut(s) 555, 940
Kzo9I GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 156, 693, 1115
MaeI CTAG 2 cut(s) 530, 741
MaeII ACGT 2 cut(s) 94, 642
MaeIII GTNAC 3 cut(s) 329, 485, 583
MalI GATC 7 cut(s) 301, 327, 390, 408, 471, 557, 942
MboI GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
MboII GAAGA 5 cut(s) 445, 518, 695, 741, 813
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 2 cut(s) 299, 469
MhlI GDGCHC 3 cut(s) 100, 642, 913
MluCI AATT 8 cut(s) 28, 243, 265, 357, 396, 720, 804, 1113
MmeI TCCRAC 2 cut(s) 128, 625
MnlI CCTC 8 cut(s) 111, 147, 285, 519, 769, 891, 1010, 1053
MroI TCCGGA 1 cut(s) 797
MroXI GAANNNNTTC 2 cut(s) 117, 808
MseI TTAA 3 cut(s) 446, 590, 755
MslI CAYNNNNRTG 3 cut(s) 692, 868, 948
MspA1I CMGCKG 2 cut(s) 514, 923
MspI CCGG 3 cut(s) 109, 798, 899
MspR9I CCNGG 5 cut(s) 109, 110, 224, 899, 900
MunI CAATTG 1 cut(s) 1113
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 703, 1109
NciI CCSGG 4 cut(s) 109, 110, 899, 900
NdeII GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
NlaIII CATG 2 cut(s) 205, 1059
NlaIV GGNNCC 2 cut(s) 229, 879
NmeAIII GCCGAG 1 cut(s) 981
NmuCI GTSAC 1 cut(s) 583
PagI TCATGA 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 117, 808
PfeI GAWTC 6 cut(s) 38, 118, 133, 659, 733, 839
PkrI GCNGC 3 cut(s) 146, 708, 1105
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 222
PspCI CACGTG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 229, 879
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 2 cut(s) 299, 469
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 3 cut(s) 692, 868, 948
SaqAI TTAA 3 cut(s) 446, 590, 755
SatI GCNGC 3 cut(s) 145, 707, 1104
Sau3AI GATC 7 cut(s) 299, 325, 388, 406, 469, 555, 940
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 5 cut(s) 109, 110, 224, 899, 900
SduI GDGCHC 3 cut(s) 100, 642, 913
SfcI CTRYAG 1 cut(s) 673
SinI GGWCC 1 cut(s) 187
SmaI CCCGGG 2 cut(s) 110, 900
SmiMI CAYNNNNRTG 3 cut(s) 692, 868, 948
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 8 cut(s) 28, 243, 265, 357, 396, 720, 804, 1113
SsiI CCGC 3 cut(s) 83, 262, 512
SspMI CTAG 2 cut(s) 530, 741
StyD4I CCNGG 5 cut(s) 107, 108, 222, 897, 898
TaaI ACNGT 2 cut(s) 553, 892
TaiI ACGT 2 cut(s) 97, 645
TaqI TCGA 2 cut(s) 36, 539
TasI AATT 8 cut(s) 28, 243, 265, 357, 396, 720, 804, 1113
TfiI GAWTC 6 cut(s) 38, 118, 133, 659, 733, 839
Tru1I TTAA 3 cut(s) 446, 590, 755
Tru9I TTAA 3 cut(s) 446, 590, 755
TscAI CASTG 2 cut(s) 558, 565
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 144, 706, 1103
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 5 cut(s) 190, 218, 741, 831, 997
TspMI CCCGGG 2 cut(s) 108, 898
TspRI CASTG 2 cut(s) 558, 565
VneI GTGCAC 2 cut(s) 638, 909
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 4 cut(s) 28, 243, 357, 804
XmaI CCCGGG 2 cut(s) 108, 898
XmnI GAANNNNTTC 2 cut(s) 117, 808
XspI CTAG 2 cut(s) 530, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.