Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

21996290 .. 21998685

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAGCAGATTTTCATTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCGATAGCTTTCTATAGTGGTGAAGCCAAAGAAATGCAACATTTGCTTCAATGCTTCAAAAGTGCTTTTGAGAATCTGACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCAGTGGATACTGCTATCTTATTCAAATTCTTCCTGCTGCTGTCATTGCTCCTATGTACTTCTCTAGAAAAATTGAGCTTGGTGTCATTAATCAGTCAGTATCGGCTTTTAATCATATCCTGGGGGACTTCTCCCTCACCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGCCATTCTGACCCTGCAGAAGGGATAAGTCTTACGTATAGTAATGTTAAAACTTTAGCTGAACTAGAGCCAAATGGATCCATACCCATAGATAAGCAACAAAAGCTACTGGACATAGAGAATTTGACTGTGCAAACAAGTAGCACTACATTGGTTAGGGATTTATCATTGGTAATCAACAATAGTGAGAATCTATTGGTGACAGGACCTAGCGGGAGTGGTAAGACTTATTTGTTAAGAATTTTGGCTCGTCTTTGGAGTGCTGGAAGAGGAAAGATTACATTCTATGTGGAAGATGAAGAAGAGCTTGTACGGTTGTACCATCCAATTCTCCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

245

Amino Acids

27.59

Weight (kDa)

4.89

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane_2	PF06472	1 - 77	5.7e-12	ABC transporter transmembrane region 2
ABC_tran	PF00005	185 - 228	1.4e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	2 cut(s)	468, 481
AcsI	RAATTY	4 cut(s)	195, 365, 517, 636
AfaI	GTAC	4 cut(s)	227, 314, 708, 716
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	101, 109, 150, 194
AjnI	CCWGG	2 cut(s)	288, 729
AluBI	AGCT	7 cut(s)	59, 146, 247, 390, 455, 502, 703
AluI	AGCT	7 cut(s)	59, 146, 247, 390, 455, 502, 703
AlwI	GGATC	2 cut(s)	468, 481
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	4 cut(s)	195, 365, 517, 636
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	33, 335
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	4 cut(s)	83, 160, 298, 607
AvaII	GGWCC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	698, 731
BamHI	GGATCC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	690, 722
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	726
BciT130I	CCWGG	2 cut(s)	290, 731
BciVI	GTATCC	1 cut(s)	170
BfaI	CTAG	3 cut(s)	234, 461, 606
BfmI	CTRYAG	2 cut(s)	64, 411
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	290, 731
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	290, 731
BpmI	CTGGAG	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	171, 510
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	290, 731
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	171, 510
BseXI	GCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	33
BshVI	ATCGAT	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	352, 473
BspACI	CCGC	1 cut(s)	609
BspDI	ATCGAT	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	468, 481
BspQI	GCTCTTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	171, 510
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	352, 473
Bst2UI	CCWGG	2 cut(s)	290, 731
Bst4CI	ACNGT	3 cut(s)	310, 526, 711
Bst6I	CTCTTC	2 cut(s)	658, 693
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	33, 335
BstKTI	GATC	2 cut(s)	355, 476
BstMBI	GATC	2 cut(s)	352, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 215, 341, 396, 499
BstNI	CCWGG	2 cut(s)	290, 731
BstSCI	CCNGG	2 cut(s)	288, 729
BstSFI	CTRYAG	2 cut(s)	64, 411
BstSNI	TACGTA	1 cut(s)	432
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	178
CfoI	GCGC	2 cut(s)	33, 335
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	4 cut(s)	226, 313, 707, 715
CviQI	GTAC	4 cut(s)	226, 313, 707, 715
DpnI	GATC	2 cut(s)	354, 475
DpnII	GATC	2 cut(s)	352, 473
Eam1104I	CTCTTC	2 cut(s)	658, 693
EarI	CTCTTC	2 cut(s)	658, 693
Eco105I	TACGTA	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	602
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	288, 729
EcoRV	GATATC	1 cut(s)	385
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	308
FauI	CCCGC	1 cut(s)	602
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	705
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	234, 461, 606
GlaI	GCGC	2 cut(s)	32, 334
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	713
HhaI	GCGC	2 cut(s)	33, 335
Hin6I	GCGC	2 cut(s)	31, 333
HinP1I	GCGC	2 cut(s)	31, 333
HinfI	GANTC	4 cut(s)	50, 124, 130, 586
HphI	GGTGA	4 cut(s)	83, 160, 298, 607
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	129, 406
Hpy188III	TCNNGA	4 cut(s)	38, 150, 158, 234
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	310, 526, 711
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	88, 413, 529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 215, 341, 396, 499
HpySE526I	ACGT	1 cut(s)	431
HspAI	GCGC	2 cut(s)	31, 333
Kzo9I	GATC	2 cut(s)	352, 473
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	184, 216, 275, 302, 423, 491, 585, 645, 716
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	234, 461, 606
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	354, 475
MboI	GATC	2 cut(s)	352, 473
MboII	GAAGA	5 cut(s)	191, 675, 701, 707, 710
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	9 cut(s)	134, 195, 240, 317, 348, 365, 517, 636, 723
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	314, 659
MseI	TTAA	4 cut(s)	258, 279, 444, 632
MspR9I	CCNGG	2 cut(s)	290, 731
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	2 cut(s)	290, 731
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	94, 215, 341, 396, 499
NdeII	GATC	2 cut(s)	352, 473
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	693
PfeI	GAWTC	3 cut(s)	50, 124, 586
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	602
PshBI	ATTAAT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	288, 729
PspGI	CCWGG	2 cut(s)	288, 729
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	602
PspPPI	RGGWCCY	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	4 cut(s)	227, 314, 708, 716
RsaNI	GTAC	4 cut(s)	226, 313, 707, 715
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	258, 279, 444, 632
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	352, 473
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	290, 731
SfcI	CTRYAG	2 cut(s)	64, 411
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SnaBI	TACGTA	1 cut(s)	432
Sse9I	AATT	9 cut(s)	134, 195, 240, 317, 348, 365, 517, 636, 723
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	3 cut(s)	234, 461, 606
StyD4I	CCNGG	2 cut(s)	288, 729
TaaI	ACNGT	3 cut(s)	310, 526, 711
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	37, 53, 355
TasI	AATT	9 cut(s)	134, 195, 240, 317, 348, 365, 517, 636, 723
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	50, 124, 586
Tru1I	TTAA	4 cut(s)	258, 279, 444, 632
Tru9I	TTAA	4 cut(s)	258, 279, 444, 632
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	5, 378, 708
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	4 cut(s)	195, 365, 517, 636
XbaI	TCTAGA	1 cut(s)	233
XspI	CTAG	3 cut(s)	234, 461, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.