Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

17008208 .. 17009048

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTATCTCTGGCAATAAGGAATGATGCCAACTTGATTCGACTTTGTTCTCAGGGTTTGGTGACATTAAACTTCCTACAAGAGAAAAAGGAAGCAGATTTTCGTTATGGACTTGTGCACGTTCGAGAAAATGCTGAATCAATAGCTTTCTATAGTGGTGAAGACAATGAAATGCAACTTTTGCTGCAATGCTTCAAAAGTGCTTTTGAGAATCTAACTCAATTGTTGATATATTCAAGAAATCCTGAGTTTTTCACTAGTGGATACCGCTATCTTATTCAAATTCTTCCTGCTGCTGTCGTTGCTCCTATGTACTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

107

Amino Acids

12.31

Weight (kDa)

5.29

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane_2	PF06472	10 - 106	1.2e-16	ABC transporter transmembrane region 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	196, 237, 281
AhlI	ACTAGT	1 cut(s)	257
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	184, 293
ApoI	RAATTY	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	73, 170
BaeGI	GKGCMC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	171, 280
BciVI	GTATCC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	185, 294
BlsI	GCNGC	2 cut(s)	186, 295
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	65, 237
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	171, 280
BsiHKAI	GWGCWC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	64, 238
BsrDI	GCAATG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	51, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 302
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	171, 280
BstV2I	GAAGAC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	313
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	51, 246
FaiI	YATR	4 cut(s)	108, 153, 232, 311
Fnu4HI	GCNGC	2 cut(s)	185, 294
Fsp4HI	GCNGC	2 cut(s)	185, 294
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	185, 294
HinfI	GANTC	3 cut(s)	37, 137, 211
HphI	GGTGA	2 cut(s)	73, 170
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	125, 237, 245
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	118, 175, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 302
HpyF3I	CTNAG	2 cut(s)	51, 246
HpySE526I	ACGT	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	38, 258, 303
Lsp1109I	GCAGC	2 cut(s)	171, 280
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	173, 278
MfeI	CAATTG	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	221, 282
MseI	TTAA	2 cut(s)	68, 322
MunI	CAATTG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	181, 302
NmuCI	GTSAC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	37, 137, 211
PkrI	GCNGC	2 cut(s)	186, 295
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	68, 322
SatI	GCNGC	2 cut(s)	185, 294
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	2 cut(s)	123, 148
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	2 cut(s)	221, 282
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	40, 124
TasI	AATT	2 cut(s)	221, 282
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	37, 137, 211
Tru1I	TTAA	2 cut(s)	68, 322
Tru9I	TTAA	2 cut(s)	68, 322
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	184, 293
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	183
VneI	GTGCAC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	282
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.