Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

17415573 .. 17416684

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGTCGGGACTTCTACAATGCCCTTGCCAATAAGGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGATTTTTGTGTTGCGGAATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGGAGTGTTATTACATTGACCATTACCTGAGCAACCAAACATTTTACAGAATTCAATCCCAATCAATCATTGATAATCCAGATCAGCGAATTGTTGATGATCTAAGTTCTTTCACGGGGACAACCCTGTCATTCTCTTTAACACTCTTCAATGCTGTGATAGATCTCATATCATTCAGTAACATCTTATTTGGTATCTATCCTCCACTGTTTGTTGTTCTTCTAGTATATTCGATTGGTGGAACAGTGATCAGTGTCTTTATTGGAAGGGTAAGTTATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

5.66

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane_2	PF06472	3 - 162	2e-27	ABC transporter transmembrane region 2
SbmA_BacA	PF05992	33 - 156	1.9e-06	SbmA/BacA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	159, 273
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	61, 278, 373
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	159, 273
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	2 cut(s)	215, 385
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	43, 140
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	43, 140
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	89, 355
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	89, 355
Bsp143I	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	432, 469
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	251, 326
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	6 cut(s)	48, 218, 307, 325, 388, 474
BstMBI	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	41, 138
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	215, 385
BstYI	RGATCY	2 cut(s)	215, 385
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	428, 474, 481
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	2 cut(s)	7, 57
CviKI_1	RGCY	2 cut(s)	7, 57
DdeI	CTNAG	2 cut(s)	251, 326
DpnI	GATC	6 cut(s)	47, 217, 306, 324, 387, 473
DpnII	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	103
EcoRI	GAATTC	2 cut(s)	159, 273
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	121
FaiI	YATR	4 cut(s)	119, 186, 392, 451
FaqI	GGGAC	2 cut(s)	89, 355
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	74, 118, 302
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	32, 483
HpyCH4III	ACNGT	2 cut(s)	432, 469
HpyCH4V	TGCA	2 cut(s)	4, 188
HpyF3I	CTNAG	2 cut(s)	251, 326
Hsp92II	CATG	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
LpnPI	CCDG	8 cut(s)	53, 55, 125, 138, 152, 263, 315, 362
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	6 cut(s)	47, 217, 306, 324, 387, 473
MboI	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
MboII	GAAGA	3 cut(s)	10, 361, 434
MflI	RGATCY	2 cut(s)	215, 385
MluCI	AATT	5 cut(s)	61, 159, 181, 273, 312
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	3 cut(s)	5, 201, 435
MseI	TTAA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	43, 140
MvaI	CCWGG	1 cut(s)	140
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	215, 385
PvuII	CAGCTG	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	6 cut(s)	45, 215, 304, 322, 385, 471
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	43, 140
SetI	ASST	4 cut(s)	9, 141, 212, 252
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	5 cut(s)	61, 159, 181, 273, 312
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	41, 138
TaaI	ACNGT	2 cut(s)	432, 469
TaqI	TCGA	1 cut(s)	455
TasI	AATT	5 cut(s)	61, 159, 181, 273, 312
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	3 cut(s)	435, 474, 481
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	106, 134
TspRI	CASTG	3 cut(s)	435, 474, 481
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	159, 273
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.