Rh5AG161400

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001312
Physical Location & Seq
Reverse (-)
17336087 .. 17341750
5664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG161400.1

Sequence Viewer

Length: 1680 bp
ATGACGCGTTATTACATTGACCGTTACCTGAGCAACCAAACATTTTACAGAATTCAATCCCAATCAATCATTGATAATCCAGATCAGCGAATTGTTGATGATCTAAGTTCTTTCACGGGGACAGCTCTGTCATTCTCTTTAACACTCTTCAATGCTGTGATAGATCTCATATCATTCAGTAACATCTTATTTGGTATCTATCCTCCGCTGTTTGTTGTTCTGCTAGTATATTCGATTGGTGGAACAGTGATCAGTGTCTTTATTGGAAGGGGTTTGGTGACATTAAACTTCCTGCAAGAGAAAAAGGAAGCAGATTTTCGTTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCAATAGCTTTCTATAGTGGTGAAGACAATGAAATGCAACTTTTGCTGCAACGCTTCAAAAGTGCTTTTGAGAATCTAACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCAGTGGATACCGCTATCTTATTCAAATTCTTCCTGCTGCTGTCGTTGCTCCTATGTACTTCTCTGGAAAAATTGAGTTTGGTGTCATTAATCAGTCAGTATCTGCTTTTAATCATATCCTGGGGGACTTCTCCCTTATCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGGTGAATTTGATGATTATTTGGATATTTGCTCTCAACGCCATTCTGACCCTGCAGAAGGGATAAGTCTTACATATAGTAATGTTAAAACTTCAGCTGAACTGGAGCCAAATGGATCCATACCCATAGATAAGCAACAAAAGCTACTGGATATAGAGAATTTGACTGTGAAAACACCAAGTAACACTACACTGGTCAGGGATTTGTCATTGGTAATCAACAACAACGAGAATCTATTGGTGACCGGACCTAGCGGGAGTGGTAAGACTTCTTTGTTAAGAACTTTGGCTGGTCTTTGGAGTGCTGGAAAAGGAAAAATCACATTCTATGTAGAAGATGAAGAAGAACTTCTACCATCCAATTCTCCAGGTGTAGTTCCTCTTGATACTGCTAATGATAAATCTGGGGAACTTGAAAGACCCTCAAATAGGAATTATAAGGGCATATTTTTCCTTCCTCAAAGACCATATATGGTTCTGGGAACACTTCGTCAGCAATTGCTGTATCCTACATGGGCTAATGATGAGGCTTCCACATTAGACACTACTAAACCAACTGGTTCTCTGCCTTTCTTGATGCAGGCCCCAAACTCACAGCATAAGAGTGCAAAGCCTAAACCCACAACGGAGGATATGATACAGGTTTTGGAGGATGTCCGGCTTGGCTATATATTATCCCGATTCAGTAATTTGGATTGTACTTATGAATGGTCTAGTGTCCTCTCCCTTGGAGAGCAGCAACGCCTTGCTTTTGCACGACTGTTGCTTTCGAAACCAAAGGTGGTTCTTTTAGATGAATCTACCAGTGCTTTAGATGAAGTCAACGAGGCTCATCTATACAAGCAGATAGAAAGAGCAGGCATCACCTATATTAGCATTGGCCACCGGCGAACTCTATATCAGTACCACAACAAGAACTTGCGTATATCCACAGTCGATCCGACCAACGCCCAACAGAATTGGCTCATTGAACCCATCAATCAAGACAATTTGTATAATCTCTCAAATCTACAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

559

Amino Acids

62.97

Weight (kDa)

5.18

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 2 - 178 1.6e-37 ABC transporter transmembrane region 2
SbmA_BacA PF05992 15 - 226 2.9e-15 SbmA/BacA-like family
ABC_tran PF00005 287 - 489 1.2e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AasI GACNNNNNNGTC 1 cut(s) 127
AccII CGCG 2 cut(s) 7, 336
AciI CCGC 3 cut(s) 206, 484, 915
AclWI GGATC 3 cut(s) 771, 784, 1592
AcoI YGGCCR 1 cut(s) 1540
AcsI RAATTY 4 cut(s) 51, 498, 668, 820
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 4 cut(s) 530, 617, 1360, 1565
AfiI CCNNNNNNNGG 2 cut(s) 719, 1089
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 7 cut(s) 56, 151, 412, 453, 497, 1076, 1631
AjnI CCWGG 2 cut(s) 591, 1027
AluBI AGCT 5 cut(s) 125, 362, 449, 758, 805
AluI AGCT 5 cut(s) 125, 362, 449, 758, 805
AlwI GGATC 3 cut(s) 771, 784, 1592
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 2 cut(s) 1242, 1540
ApeKI GCWGC 3 cut(s) 400, 509, 1396
ApoI RAATTY 4 cut(s) 51, 498, 668, 820
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 336, 638
AspS9I GGNCC 2 cut(s) 908, 1243
AsuHPI GGTGA 6 cut(s) 289, 386, 463, 677, 913, 1516
AsuII TTCGAA 1 cut(s) 1430
AvaII GGWCC 1 cut(s) 908
BalI TGGCCA 1 cut(s) 1542
BamHI GGATCC 1 cut(s) 776
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 3 cut(s) 387, 496, 1408
BccI CCATC 2 cut(s) 1024, 1643
BciT130I CCWGG 2 cut(s) 593, 1029
BciVI GTATCC 2 cut(s) 473, 1176
BclI TGATCA 1 cut(s) 249
BfaI CTAG 3 cut(s) 224, 912, 1374
BfmI CTRYAG 3 cut(s) 367, 714, 1670
BfuI GTATCC 2 cut(s) 473, 1176
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 401, 510, 1397
BlsI GCNGC 3 cut(s) 402, 511, 1398
Bme1390I CCNGG 2 cut(s) 593, 1029
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 2 cut(s) 908, 1243
BmiI GGNNCC 3 cut(s) 768, 778, 1245
BmrFI CCNGG 2 cut(s) 593, 1029
BmsI GCATC 2 cut(s) 1227, 1530
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 2 cut(s) 785, 1011
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 1430
BpuEI CTTGAG 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 592, 1387
BsaWI WCCGGW 1 cut(s) 905
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 1089
Bse118I RCCGGY 1 cut(s) 1545
Bse1I ACTGG 6 cut(s) 474, 768, 813, 858, 1222, 1464
BseBI CCWGG 2 cut(s) 593, 1029
BseDI CCNNGG 2 cut(s) 592, 1387
BseGI GGATG 2 cut(s) 1016, 1318
BseLI CCNNNNNNNGG 2 cut(s) 719, 1089
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 6 cut(s) 474, 768, 813, 858, 1222, 1464
BseXI GCAGC 3 cut(s) 387, 496, 1408
Bsh1236I CGCG 2 cut(s) 7, 336
BshFI GGCC 2 cut(s) 1244, 1542
BsiSI CCGG 3 cut(s) 906, 1318, 1546
BslFI GGGAC 2 cut(s) 133, 611
BslI CCNNNNNNNGG 2 cut(s) 719, 1089
BsmFI GGGAC 2 cut(s) 133, 611
BsnI GGCC 2 cut(s) 1244, 1542
Bsp119I TTCGAA 1 cut(s) 1430
Bsp143I GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
BspACI CCGC 3 cut(s) 206, 484, 915
BspANI GGCC 2 cut(s) 1244, 1542
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 7, 336
BspLI GGNNCC 3 cut(s) 768, 778, 1245
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 3 cut(s) 771, 784, 1592
BspT104I TTCGAA 1 cut(s) 1430
BsrFI RCCGGY 1 cut(s) 1545
BsrI ACTGG 6 cut(s) 474, 768, 813, 858, 1222, 1464
BssAI RCCGGY 1 cut(s) 1545
BssECI CCNNGG 2 cut(s) 592, 1387
BssMI GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
BssT1I CCWWGG 1 cut(s) 1387
Bst2UI CCWGG 2 cut(s) 593, 1029
Bst4CI ACNGT 6 cut(s) 23, 247, 829, 1422, 1594, 1674
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 1430
BstC8I GCNNGC 2 cut(s) 1242, 1519
BstDEI CTNAG 2 cut(s) 29, 104
BstEII GGTNACC 1 cut(s) 901
BstENI CCTNNNNNAGG 2 cut(s) 717, 1087
BstF5I GGATG 2 cut(s) 1016, 1318
BstFNI CGCG 2 cut(s) 7, 336
BstHHI GCGC 2 cut(s) 336, 638
BstKTI GATC 7 cut(s) 85, 103, 166, 252, 658, 779, 1600
BstMBI GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
BstMWI GCNNNNNNNGC 5 cut(s) 397, 518, 644, 699, 802
BstNI CCWGG 2 cut(s) 593, 1029
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 2 cut(s) 591, 1027
BstSFI CTRYAG 3 cut(s) 367, 714, 1670
BstUI CGCG 2 cut(s) 7, 336
BstV1I GCAGC 3 cut(s) 387, 496, 1408
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 163, 776
BstYI RGATCY 2 cut(s) 163, 776
BsuI GTATCC 2 cut(s) 473, 1176
BsuRI GGCC 2 cut(s) 1244, 1542
BtsCI GGATG 2 cut(s) 1016, 1318
BtsIMutI CAGTG 5 cut(s) 252, 259, 481, 851, 1471
Cac8I GCNNGC 2 cut(s) 1242, 1519
CaiI CAGNNNCTG 1 cut(s) 575
CfoI GCGC 2 cut(s) 336, 638
Cfr10I RCCGGY 1 cut(s) 1545
Cfr13I GGNCC 2 cut(s) 908, 1243
CseI GACGC 1 cut(s) 13
Csp6I GTAC 4 cut(s) 529, 616, 1359, 1564
CviAII CATG 1 cut(s) 1173
CviQI GTAC 4 cut(s) 529, 616, 1359, 1564
DdeI CTNAG 2 cut(s) 29, 104
DpnI GATC 7 cut(s) 84, 102, 165, 251, 657, 778, 1599
DpnII GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 1540
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 1387
Eco47I GGWCC 1 cut(s) 908
Eco57I CTGAAG 1 cut(s) 738
Eco91I GGTNACC 1 cut(s) 901
EcoNI CCTNNNNNAGG 2 cut(s) 717, 1087
EcoO109I RGGNCCY 1 cut(s) 1243
EcoO65I GGTNACC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 591, 1027
EcoT14I CCWWGG 1 cut(s) 1387
ErhI CCWWGG 1 cut(s) 1387
FaeI CATG 1 cut(s) 1176
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 2 cut(s) 133, 611
FatI CATG 1 cut(s) 1172
FauI CCCGC 1 cut(s) 908
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 401, 510, 1397
FokI GGATG 2 cut(s) 1003, 1325
Fsp4HI GCNGC 3 cut(s) 401, 510, 1397
FspBI CTAG 3 cut(s) 224, 912, 1374
GlaI GCGC 2 cut(s) 335, 637
GluI GCNGC 3 cut(s) 401, 510, 1397
GsuI CTGGAG 2 cut(s) 785, 1011
HaeIII GGCC 2 cut(s) 1244, 1542
HapII CCGG 3 cut(s) 906, 1318, 1546
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 336, 638
Hin1II CATG 1 cut(s) 1176
Hin6I GCGC 2 cut(s) 334, 636
HinP1I GCGC 2 cut(s) 334, 636
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HinfI GANTC 5 cut(s) 353, 427, 892, 1341, 1457
HpaII CCGG 3 cut(s) 906, 1318, 1546
HphI GGTGA 6 cut(s) 289, 386, 463, 677, 913, 1516
Hpy166II GTNNAC 2 cut(s) 616, 1483
Hpy188I TCNGA 2 cut(s) 709, 1602
Hpy188III TCNNGA 9 cut(s) 80, 341, 453, 461, 537, 1043, 1234, 1338, 1643
Hpy8I GTNNAC 2 cut(s) 616, 1483
HpyAV CCTTC 3 cut(s) 261, 713, 1124
HpyCH4III ACNGT 6 cut(s) 23, 247, 829, 1422, 1594, 1674
HpyCH4V TGCA 7 cut(s) 295, 391, 403, 716, 1240, 1268, 1415
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 518, 644, 699, 802
HpyF3I CTNAG 2 cut(s) 29, 104
Hsp92II CATG 1 cut(s) 1176
HspAI GCGC 2 cut(s) 334, 636
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
LmnI GCTCC 2 cut(s) 526, 766
Lsp1109I GCAGC 3 cut(s) 387, 496, 1408
LweI GCATC 2 cut(s) 1227, 1530
MaeI CTAG 3 cut(s) 224, 912, 1374
MaeIII GTNAC 5 cut(s) 23, 179, 277, 842, 901
MalI GATC 7 cut(s) 84, 102, 165, 251, 657, 778, 1599
MboI GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
MboII GAAGA 6 cut(s) 139, 389, 494, 1007, 1013, 1016
MfeI CAATTG 2 cut(s) 437, 1157
MflI RGATCY 2 cut(s) 163, 776
MlsI TGGCCA 1 cut(s) 1542
MluI ACGCGT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 1542
MmeI TCCRAC 1 cut(s) 1625
MnlI CCTC 9 cut(s) 213, 1050, 1093, 1128, 1180, 1282, 1303, 1391, 1480
Mox20I TGGCCA 1 cut(s) 1542
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 1542
MseI TTAA 6 cut(s) 140, 284, 561, 582, 747, 938
MslI CAYNNNNRTG 1 cut(s) 1263
Msp20I TGGCCA 1 cut(s) 1542
MspA1I CMGCKG 2 cut(s) 208, 758
MspI CCGG 3 cut(s) 906, 1318, 1546
MspR9I CCNGG 2 cut(s) 593, 1029
MunI CAATTG 2 cut(s) 437, 1157
MvaI CCWGG 2 cut(s) 593, 1029
MvnI CGCG 2 cut(s) 7, 336
MwoI GCNNNNNNNGC 5 cut(s) 397, 518, 644, 699, 802
NdeII GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
NlaIII CATG 1 cut(s) 1176
NlaIV GGNNCC 3 cut(s) 768, 778, 1245
NmuCI GTSAC 2 cut(s) 277, 901
NspV TTCGAA 1 cut(s) 1430
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 5 cut(s) 353, 427, 892, 1341, 1457
PkrI GCNGC 3 cut(s) 402, 511, 1398
PshBI ATTAAT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 1098
Psp6I CCWGG 2 cut(s) 591, 1027
PspEI GGTNACC 1 cut(s) 901
PspGI CCWGG 2 cut(s) 591, 1027
PspN4I GGNNCC 3 cut(s) 768, 778, 1245
PspPI GGNCC 2 cut(s) 908, 1243
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 163, 776
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 4 cut(s) 530, 617, 1360, 1565
RsaNI GTAC 4 cut(s) 529, 616, 1359, 1564
RseI CAYNNNNRTG 1 cut(s) 1263
SaqAI TTAA 6 cut(s) 140, 284, 561, 582, 747, 938
SatI GCNGC 3 cut(s) 401, 510, 1397
Sau3AI GATC 7 cut(s) 82, 100, 163, 249, 655, 776, 1597
Sau96I GGNCC 2 cut(s) 908, 1243
ScrFI CCNGG 2 cut(s) 593, 1029
SfaNI GCATC 2 cut(s) 1227, 1530
SfcI CTRYAG 3 cut(s) 367, 714, 1670
SfuI TTCGAA 1 cut(s) 1430
SgrAI CRCCGGYG 1 cut(s) 1545
SinI GGWCC 1 cut(s) 908
SmiMI CAYNNNNRTG 1 cut(s) 1263
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SsiI CCGC 3 cut(s) 206, 484, 915
SspMI CTAG 3 cut(s) 224, 912, 1374
StyD4I CCNGG 2 cut(s) 591, 1027
StyI CCWWGG 1 cut(s) 1387
TaaI ACNGT 6 cut(s) 23, 247, 829, 1422, 1594, 1674
TaqI TCGA 5 cut(s) 233, 340, 658, 1430, 1596
TatI WGTACW 2 cut(s) 528, 1358
TfiI GAWTC 5 cut(s) 353, 427, 892, 1341, 1457
Tru1I TTAA 6 cut(s) 140, 284, 561, 582, 747, 938
Tru9I TTAA 6 cut(s) 140, 284, 561, 582, 747, 938
TscAI CASTG 5 cut(s) 252, 259, 481, 858, 1471
TseFI GTSAC 2 cut(s) 277, 901
TseI GCWGC 3 cut(s) 400, 509, 1396
Tsp45I GTSAC 2 cut(s) 277, 901
TspDTI ATGAA 5 cut(s) 399, 1014, 1380, 1470, 1491
TspGWI ACGGA 1 cut(s) 1301
TspRI CASTG 5 cut(s) 252, 259, 481, 858, 1471
VpaK11BI GGWCC 1 cut(s) 908
VspI ATTAAT 1 cut(s) 561
XagI CCTNNNNNAGG 2 cut(s) 717, 1087
XapI RAATTY 4 cut(s) 51, 498, 668, 820
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 3 cut(s) 224, 912, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.