Rh5CG316700

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001312
Physical Location & Seq
Forward (+)
35028799 .. 35046813
18015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG316700.1

Sequence Viewer

Length: 1143 bp
ATGACGATCGCGACGGTGCAAAGCGAACTTTGGAGCAGAGCAGCGCAATCCTCCACTGCATTATGGATGCGAGTCTGGCCTGGATTGCTACGGCGGAGATTTCAAGGTGGCCGTTGGACTGAGGGTAACCTCAATTACTCTATCGTGGGATTCGTGGCTTTAGATAGTTGTACGGAAACTGGCGGCACGGGTTTTAGCTTCTTGTATACATATTATAAGCTTTATAGATATATCAAATTCTCTAAGAGTGTTCATCTAATGATCATAGGTTCATTTTTTGTTGTTCTTCTAGTATATTCGATTGGTGGAACAGTGATCAGTGTCTTTATTGGAAGGGGTTTGGTGACATTAAACTTCTTGCAAGAGAAAATGGAAGCAGATTTTCATTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCGATAGCTTTCTATAGTGGTGAAGCCAAAGAAATGCAACATTTGCTTCAATGCTTCAAAAGTGCTTTTGAGAATCTGACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCGGTGGAAATCTTGAGTTTTTCACACTGCTATCTTATTCAAATTCTTCCTGCTGCTGTCGTTGCTCCTATTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGCCAGTCTGACCCTGCAGAAGGGATAAGTCTTACGTATAGTAATGTTAAAACTTTAGCTGAACTGGAGCCAAATGGATGCATACCCATAGATAAGCAACAAAAGCTACTGGACATAGAGAATTTGACTGTGCAAACACCAAGTAGCACTACATTGATTAGGGATTTATCATTGGTAATCAACAATAATGAGAATCTATTGGTGACAGGACCTAGCGGGAGTGGTAAGACTTATTTGTTAAGAATTTTGGCTGGTCTTTGGAGTGCTGGAAGAGGAAAGATTACATTCTATGTGGAAGATGAAGAAGAGCTTGTACCATCCAATTCTCCAGGTGTAGGTCCTCATGGTACTGCTAATGATAAATATGGGGAACATGAAAGACCCTCAAATAGGAGTTATAAGGGCATATTTTTCGTTCCTGTGAAGCGGAAAGACGAGCAATGCATCTTGCAGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

380

Amino Acids

42.64

Weight (kDa)

5.85

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 71 - 180 2.6e-16 ABC transporter transmembrane region 2
ABC_tran PF00005 281 - 324 6.3e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 216, 1080
AccI GTMKAC 1 cut(s) 206
AccII CGCG 2 cut(s) 11, 402
AciI CCGC 4 cut(s) 94, 183, 897, 1108
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 5 cut(s) 236, 580, 650, 802, 924
AfaI GTAC 3 cut(s) 172, 996, 1030
AfiI CCNNNNNNNGG 3 cut(s) 701, 1016, 1071
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 5 cut(s) 104, 470, 478, 519, 579
AjnI CCWGG 2 cut(s) 79, 1009
AluBI AGCT 8 cut(s) 198, 220, 428, 515, 675, 740, 787, 991
AluI AGCT 8 cut(s) 198, 220, 428, 515, 675, 740, 787, 991
AoxI GGCC 2 cut(s) 77, 109
ApeKI GCWGC 2 cut(s) 41, 591
ApoI RAATTY 5 cut(s) 236, 580, 650, 802, 924
AsiGI ACCGGT 1 cut(s) 539
AspLEI GCGC 3 cut(s) 46, 402, 620
AspS9I GGNCC 2 cut(s) 890, 1019
AsuHPI GGTGA 4 cut(s) 355, 452, 529, 895
AvaII GGWCC 2 cut(s) 890, 1019
BarI GAAGNNNNNNTAC 2 cut(s) 978, 1010
BbvI GCAGC 2 cut(s) 53, 578
BccI CCATC 1 cut(s) 1006
BceAI ACGGC 2 cut(s) 96, 107
BcgI CGANNNNNNTGC 2 cut(s) 1075, 1109
BciT130I CCWGG 2 cut(s) 81, 1011
BclI TGATCA 2 cut(s) 261, 315
BfaI CTAG 2 cut(s) 290, 894
BfmI CTRYAG 2 cut(s) 433, 696
BisI GCNGC 3 cut(s) 42, 184, 592
BlsI GCNGC 3 cut(s) 43, 185, 593
Bme1390I CCNGG 2 cut(s) 81, 1011
Bme18I GGWCC 2 cut(s) 890, 1019
BmgT120I GGNCC 2 cut(s) 890, 1019
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 2 cut(s) 81, 1011
BmsI GCATC 3 cut(s) 57, 749, 1134
BpmI CTGGAG 2 cut(s) 767, 993
BpuEI CTTGAG 2 cut(s) 548, 572
Bsa29I ATCGAT 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 3 cut(s) 701, 1016, 1071
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 4 cut(s) 184, 685, 750, 795
Bse3DI GCAATG 1 cut(s) 1127
BseBI CCWGG 2 cut(s) 81, 1011
BseCI ATCGAT 1 cut(s) 422
BseGI GGATG 3 cut(s) 72, 764, 998
BseLI CCNNNNNNNGG 3 cut(s) 701, 1016, 1071
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 4 cut(s) 184, 685, 750, 795
BseXI GCAGC 2 cut(s) 53, 578
Bsh1236I CGCG 2 cut(s) 11, 402
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 79, 111
BshTI ACCGGT 1 cut(s) 539
BshVI ATCGAT 1 cut(s) 422
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 540
BslI CCNNNNNNNGG 3 cut(s) 701, 1016, 1071
BsnI GGCC 2 cut(s) 79, 111
Bsp143I GATC 4 cut(s) 6, 261, 315, 637
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 4 cut(s) 94, 183, 897, 1108
BspANI GGCC 2 cut(s) 79, 111
BspCNI CTCAG 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 422
BspFNI CGCG 2 cut(s) 11, 402
BspLI GGNNCC 1 cut(s) 750
BspMAI CTGCAG 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 981
BsrDI GCAATG 1 cut(s) 1127
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 4 cut(s) 184, 685, 750, 795
BssAI RCCGGY 1 cut(s) 539
BssMI GATC 4 cut(s) 6, 261, 315, 637
BssNAI GTATAC 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 81, 1011
Bst4CI ACNGT 3 cut(s) 16, 313, 811
Bst6I CTCTTC 2 cut(s) 946, 981
BstAPI GCANNNNNTGC 1 cut(s) 463
BstBAI YACGTR 1 cut(s) 717
BstDEI CTNAG 2 cut(s) 120, 243
BstEII GGTNACC 1 cut(s) 125
BstENI CCTNNNNNAGG 2 cut(s) 699, 1069
BstF5I GGATG 3 cut(s) 72, 764, 998
BstFNI CGCG 2 cut(s) 11, 402
BstHHI GCGC 3 cut(s) 46, 402, 620
BstKTI GATC 4 cut(s) 9, 264, 318, 640
BstMBI GATC 4 cut(s) 6, 261, 315, 637
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 7 cut(s) 76, 85, 463, 600, 626, 681, 784
BstNI CCWGG 2 cut(s) 81, 1011
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 79, 1009
BstSFI CTRYAG 2 cut(s) 433, 696
BstSNI TACGTA 1 cut(s) 717
BstUI CGCG 2 cut(s) 11, 402
BstV1I GCAGC 2 cut(s) 53, 578
BstZ17I GTATAC 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 2 cut(s) 79, 111
BsuTUI ATCGAT 1 cut(s) 422
BtsCI GGATG 3 cut(s) 72, 764, 998
BtsI GCAGTG 2 cut(s) 54, 563
BtsIMutI CAGTG 4 cut(s) 54, 318, 325, 563
BtuMI TCGCGA 1 cut(s) 11
CfoI GCGC 3 cut(s) 46, 402, 620
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 890, 1019
ClaI ATCGAT 1 cut(s) 422
Csp6I GTAC 3 cut(s) 171, 995, 1029
CspAI ACCGGT 1 cut(s) 539
CviAII CATG 2 cut(s) 1025, 1055
CviQI GTAC 3 cut(s) 171, 995, 1029
DdeI CTNAG 2 cut(s) 120, 243
DpnI GATC 4 cut(s) 8, 263, 317, 639
DpnII GATC 4 cut(s) 6, 261, 315, 637
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 946, 981
EarI CTCTTC 2 cut(s) 946, 981
EciI GGCGGA 1 cut(s) 109
Eco105I TACGTA 1 cut(s) 717
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 890, 1019
Eco91I GGTNACC 1 cut(s) 125
EcoNI CCTNNNNNAGG 2 cut(s) 699, 1069
EcoO109I RGGNCCY 2 cut(s) 890, 1019
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 79, 1009
EcoRV GATATC 1 cut(s) 670
EcoT22I ATGCAT 2 cut(s) 764, 1127
FaeI CATG 2 cut(s) 1028, 1058
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FatI CATG 2 cut(s) 1024, 1054
FauI CCCGC 1 cut(s) 890
FbaI TGATCA 2 cut(s) 261, 315
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 42, 184, 592
FokI GGATG 3 cut(s) 79, 771, 985
Fsp4HI GCNGC 3 cut(s) 42, 184, 592
FspBI CTAG 2 cut(s) 290, 894
GlaI GCGC 3 cut(s) 45, 401, 619
GluI GCNGC 3 cut(s) 42, 184, 592
GsuI CTGGAG 2 cut(s) 767, 993
HaeIII GGCC 2 cut(s) 79, 111
HapII CCGG 1 cut(s) 540
HhaI GCGC 3 cut(s) 46, 402, 620
Hin1II CATG 2 cut(s) 1028, 1058
Hin6I GCGC 3 cut(s) 44, 400, 618
HinP1I GCGC 3 cut(s) 44, 400, 618
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 6 cut(s) 72, 150, 419, 493, 499, 874
HpaII CCGG 1 cut(s) 540
HphI GGTGA 4 cut(s) 355, 452, 529, 895
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 498, 691
Hpy188III TCNNGA 5 cut(s) 10, 407, 519, 527, 551
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 327, 695
HpyCH4III ACNGT 3 cut(s) 16, 313, 811
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 9 cut(s) 19, 59, 361, 457, 698, 762, 814, 1125, 1132
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 85, 463, 600, 626, 681, 784
HpyF3I CTNAG 2 cut(s) 120, 243
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 2 cut(s) 1028, 1058
HspAI GCGC 3 cut(s) 44, 400, 618
Ksp22I TGATCA 2 cut(s) 261, 315
Kzo9I GATC 4 cut(s) 6, 261, 315, 637
LguI GCTCTTC 1 cut(s) 981
LmnI GCTCC 3 cut(s) 33, 608, 748
Lsp1109I GCAGC 2 cut(s) 53, 578
LweI GCATC 3 cut(s) 57, 749, 1134
MaeI CTAG 2 cut(s) 290, 894
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 3 cut(s) 125, 343, 883
MalI GATC 4 cut(s) 8, 263, 317, 639
MboI GATC 4 cut(s) 6, 261, 315, 637
MboII GAAGA 6 cut(s) 278, 576, 963, 989, 995, 998
MfeI CAATTG 1 cut(s) 503
MlyI GAGTC 2 cut(s) 81, 493
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 61, 115, 140, 947, 1032, 1075
Mph1103I ATGCAT 2 cut(s) 764, 1127
MseI TTAA 3 cut(s) 350, 729, 920
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 2 cut(s) 81, 1011
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 2 cut(s) 81, 1011
MvnI CGCG 2 cut(s) 11, 402
MwoI GCNNNNNNNGC 7 cut(s) 76, 85, 463, 600, 626, 681, 784
NdeII GATC 4 cut(s) 6, 261, 315, 637
NlaIII CATG 2 cut(s) 1028, 1058
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 2 cut(s) 343, 883
NruI TCGCGA 1 cut(s) 11
NsiI ATGCAT 2 cut(s) 764, 1127
PciSI GCTCTTC 1 cut(s) 981
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 4 cut(s) 150, 419, 493, 874
PinAI ACCGGT 1 cut(s) 539
PkrI GCNGC 3 cut(s) 43, 185, 593
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 80, 493
PpsI GAGTC 2 cut(s) 80, 493
Ppu21I YACGTR 1 cut(s) 717
PpuMI RGGWCCY 2 cut(s) 890, 1019
PsiI TTATAA 2 cut(s) 216, 1080
Psp5II RGGWCCY 2 cut(s) 890, 1019
Psp6I CCWGG 2 cut(s) 79, 1009
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 79, 1009
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 890, 1019
PspPPI RGGWCCY 2 cut(s) 890, 1019
PstI CTGCAG 1 cut(s) 700
PvuI CGATCG 1 cut(s) 9
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 3 cut(s) 172, 996, 1030
RsaNI GTAC 3 cut(s) 171, 995, 1029
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 3 cut(s) 350, 729, 920
SatI GCNGC 3 cut(s) 42, 184, 592
Sau3AI GATC 4 cut(s) 6, 261, 315, 637
Sau96I GGNCC 2 cut(s) 890, 1019
SchI GAGTC 2 cut(s) 81, 493
ScrFI CCNGG 2 cut(s) 81, 1011
SfaNI GCATC 3 cut(s) 57, 749, 1134
SfcI CTRYAG 2 cut(s) 433, 696
SgrAI CRCCGGYG 1 cut(s) 539
SinI GGWCC 2 cut(s) 890, 1019
SmlI CTYRAG 2 cut(s) 527, 551
SmoI CTYRAG 2 cut(s) 527, 551
SnaBI TACGTA 1 cut(s) 717
SsiI CCGC 4 cut(s) 94, 183, 897, 1108
SspMI CTAG 2 cut(s) 290, 894
StyD4I CCNGG 2 cut(s) 79, 1009
TaaI ACNGT 3 cut(s) 16, 313, 811
TaiI ACGT 1 cut(s) 719
TaqI TCGA 4 cut(s) 299, 406, 422, 640
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 4 cut(s) 150, 419, 493, 874
Tru1I TTAA 3 cut(s) 350, 729, 920
Tru9I TTAA 3 cut(s) 350, 729, 920
TscAI CASTG 4 cut(s) 61, 318, 325, 570
TseFI GTSAC 2 cut(s) 343, 883
TseI GCWGC 2 cut(s) 41, 591
Tsp45I GTSAC 2 cut(s) 343, 883
TspDTI ATGAA 6 cut(s) 242, 261, 374, 663, 996, 1071
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 4 cut(s) 61, 318, 325, 570
VpaK11BI GGWCC 2 cut(s) 890, 1019
XagI CCTNNNNNAGG 2 cut(s) 699, 1069
XapI RAATTY 5 cut(s) 236, 580, 650, 802, 924
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 290, 894
Zsp2I ATGCAT 2 cut(s) 764, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.