Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002769.1

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Forward (+)

47007 .. 48196

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002769.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgtacctctctagaaaaattgagcttggtgtcattaatcagtcagtatcggcttttaatcatatcctgggggacttctccctcaccgtgtaccaatttcagtctataagcgcattttcagcagtaattgatcgacttgatgaatttgatgattatttggatatcagctctcaacgtcattctgaacctgcagaagggataagtcttacgtatagtaatgttaaaactttagctgaactggagccaaatggatgcatacccatagataagcaacaaaagctactggacatagagaatttgactgtgcaaacaccaagtagcactacattgattagggatttatcattggtgacaggacctagcgggagtggtaagacttatttgttaagaattttggctggtctttggagtgctggaagaggaaagatcacattctatgtggaagatgaagaagagcttgtaccatccaattttccaggtgtaggtcctcttgcggaaagacgagcaatgcagcttgcagatgaattgatggctgtgaagtctactgcagctcagcaaaatgaggagttagagacggtcaaagctggtgcagctcaacaaaatgaagagttagaggcagtagtgaaggttagagccgctcaacaaaatgaagaattggaggcactaaaggcaagacaaaatcagactgacactcttttactcaaattgatggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

238

Amino Acids

26.21

Weight (kDa)

4.64

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	542
AciI	CCGC	3 cut(s)	363, 494, 636
AcsI	RAATTY	3 cut(s)	143, 295, 390
AfaI	GTAC	3 cut(s)	5, 92, 462
AfiI	CCNNNNNNNGG	2 cut(s)	194, 482
AjnI	CCWGG	2 cut(s)	66, 475
AluBI	AGCT	9 cut(s)	25, 168, 233, 280, 457, 514, 551, 584, 593
AluI	AGCT	9 cut(s)	25, 168, 233, 280, 457, 514, 551, 584, 593
Alw26I	GTCTC	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	511, 548, 590
ApoI	RAATTY	3 cut(s)	143, 295, 390
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	356, 485
AsuHPI	GGTGA	2 cut(s)	76, 361
AvaII	GGWCC	2 cut(s)	356, 485
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	3 cut(s)	523, 560, 602
BccI	CCATC	3 cut(s)	472, 523, 703
BciT130I	CCWGG	2 cut(s)	68, 477
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	12, 360
BfmI	CTRYAG	2 cut(s)	189, 546
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	512, 549, 591, 636
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	4 cut(s)	513, 550, 592, 637
Bme1390I	CCNGG	2 cut(s)	68, 477
Bme18I	GGWCC	2 cut(s)	356, 485
BmgT120I	GGNCC	2 cut(s)	356, 485
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	68, 477
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 482
Bse1I	ACTGG	2 cut(s)	243, 288
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	68, 477
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	257, 464
BseLI	CCNNNNNNNGG	2 cut(s)	194, 482
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	243, 288
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	523, 560, 602
BsgI	GTGCAG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	194, 482
BsmAI	GTCTC	1 cut(s)	566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	130, 426
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	363, 494, 636
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	2 cut(s)	193, 550
BspMI	ACCTGC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	243, 288
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	130, 426
Bst2UI	CCWGG	2 cut(s)	68, 477
Bst4CI	ACNGT	3 cut(s)	88, 304, 577
Bst6I	CTCTTC	3 cut(s)	412, 447, 600
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	552
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	257, 464
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	133, 429
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	130, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 277, 590, 668
BstNI	CCWGG	2 cut(s)	68, 477
BstSCI	CCNGG	2 cut(s)	66, 475
BstSFI	CTRYAG	2 cut(s)	189, 546
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	523, 560, 602
BtsCI	GGATG	2 cut(s)	257, 464
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	356, 485
Csp6I	GTAC	3 cut(s)	4, 91, 461
CviQI	GTAC	3 cut(s)	4, 91, 461
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	2 cut(s)	132, 428
DpnII	GATC	2 cut(s)	130, 426
Eam1104I	CTCTTC	3 cut(s)	412, 447, 600
EarI	CTCTTC	3 cut(s)	412, 447, 600
Eco105I	TACGTA	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	356, 485
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoO109I	RGGNCCY	2 cut(s)	356, 485
EcoRII	CCWGG	2 cut(s)	66, 475
EcoRV	GATATC	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	566
FaiI	YATR	7 cut(s)	63, 107, 213, 257, 263, 290, 438
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	86
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	4 cut(s)	512, 549, 591, 636
FokI	GGATG	2 cut(s)	264, 451
Fsp4HI	GCNGC	4 cut(s)	512, 549, 591, 636
FspBI	CTAG	2 cut(s)	12, 360
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	512, 549, 591, 636
GsuI	CTGGAG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HphI	GGTGA	2 cut(s)	76, 361
Hpy166II	GTNNAC	2 cut(s)	91, 543
Hpy188I	TCNGA	2 cut(s)	184, 684
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	91, 543
HpyAV	CCTTC	2 cut(s)	188, 619
HpyCH4III	ACNGT	3 cut(s)	88, 304, 577
HpyCH4IV	ACGT	2 cut(s)	175, 209
HpyCH4V	TGCA	7 cut(s)	191, 255, 307, 511, 518, 548, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 277, 590, 668
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	175, 209
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	130, 426
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	3 cut(s)	523, 560, 602
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	12, 360
MaeII	ACGT	2 cut(s)	175, 209
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	132, 428
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	2 cut(s)	130, 426
MboII	GAAGA	6 cut(s)	429, 455, 461, 464, 617, 662
MnlI	CCTC	7 cut(s)	17, 92, 413, 498, 556, 607, 652
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	4 cut(s)	36, 57, 222, 386
MspR9I	CCNGG	2 cut(s)	68, 477
MvaI	CCWGG	2 cut(s)	68, 477
MwoI	GCNNNNNNNGC	4 cut(s)	119, 277, 590, 668
NdeII	GATC	2 cut(s)	130, 426
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	513, 550, 592, 637
Ppu21I	YACGTR	1 cut(s)	210
PpuMI	RGGWCCY	2 cut(s)	356, 485
PshBI	ATTAAT	1 cut(s)	36
Psp5II	RGGWCCY	2 cut(s)	356, 485
Psp6I	CCWGG	2 cut(s)	66, 475
PspGI	CCWGG	2 cut(s)	66, 475
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	356, 485
PspPPI	RGGWCCY	2 cut(s)	356, 485
PstI	CTGCAG	2 cut(s)	193, 550
RsaI	GTAC	3 cut(s)	5, 92, 462
RsaNI	GTAC	3 cut(s)	4, 91, 461
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	36, 57, 222, 386
SatI	GCNGC	4 cut(s)	512, 549, 591, 636
Sau3AI	GATC	2 cut(s)	130, 426
Sau96I	GGNCC	2 cut(s)	356, 485
ScrFI	CCNGG	2 cut(s)	68, 477
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	2 cut(s)	189, 546
SinI	GGWCC	2 cut(s)	356, 485
SnaBI	TACGTA	1 cut(s)	210
SsiI	CCGC	3 cut(s)	363, 494, 636
SspMI	CTAG	2 cut(s)	12, 360
StyD4I	CCNGG	2 cut(s)	66, 475
TaaI	ACNGT	3 cut(s)	88, 304, 577
TaiI	ACGT	2 cut(s)	178, 212
TaqI	TCGA	1 cut(s)	133
TauI	GCSGC	1 cut(s)	638
Tru1I	TTAA	4 cut(s)	36, 57, 222, 386
Tru9I	TTAA	4 cut(s)	36, 57, 222, 386
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	511, 548, 590
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	5 cut(s)	156, 462, 537, 618, 663
VpaK11BI	GGWCC	2 cut(s)	356, 485
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	3 cut(s)	143, 295, 390
XbaI	TCTAGA	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	2 cut(s)	12, 360
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.