Rh5BG160600

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001312
Physical Location & Seq
Reverse (-)
16676616 .. 16691336
14721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG160600.1

Sequence Viewer

Length: 768 bp
ATGAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGCGCCGTACTGGTCCTCCGACGACAAAATCCACGCCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGCCGGGACTTCTACAATGCCCTTGCCAATAAGGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGCGCATAGTCACTGTGTCTCACTCTGCTTGGCTCATGGCTACTCCCCCCACCACTCCCATCGTCACTTTACACTAGTAGCGGCACCACCCAGGTTTCCATCACTGCCCACAATACCCACCACTACTCCCAACAGAAACTCCGTTAGAAGGAGAAGAAACGACGCCGCTTCATGGCGTCGTTCTGCTGCGGCGTCTGACTCTGTACCGCCACCACCACCGGCTCCTCCGACCCCGGAAAAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGGTGGCGGCGCCGTACTGGTCCTCCGACGACAAAGTCCAGGCCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGAATCAGCGTCGGCTTCAATTTTCTGGGCCGGGACTTCTACAATGCTCTTGCCAATAAGGACCAGGAGCAATTCACGAAGCAATTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

255

Amino Acids

28.31

Weight (kDa)

9.84

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccB1I GGYRCC 5 cut(s) 61, 242, 346, 559, 740
AccIII TCCGGA 2 cut(s) 38, 537
AciI CCGC 6 cut(s) 59, 344, 429, 452, 470, 557
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 258, 756
AcyI GRCGYC 5 cut(s) 62, 426, 439, 455, 560
AfaI GTAC 3 cut(s) 68, 468, 566
AfiI CCNNNNNNNGG 3 cut(s) 141, 411, 435
AgsI TTSAA 2 cut(s) 160, 658
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 7 cut(s) 95, 237, 353, 588, 593, 702, 735
AluBI AGCT 2 cut(s) 106, 604
AluI AGCT 2 cut(s) 106, 604
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 2 cut(s) 33, 532
Aor13HI TCCGGA 2 cut(s) 38, 537
AoxI GGCC 3 cut(s) 169, 591, 667
ApeKI GCWGC 5 cut(s) 33, 103, 449, 532, 601
ApoI RAATTY 2 cut(s) 258, 756
AspLEI GCGC 3 cut(s) 64, 268, 562
AspS9I GGNCC 6 cut(s) 72, 169, 202, 570, 667, 700
AsuC2I CCSGG 4 cut(s) 142, 173, 497, 671
AvaII GGWCC 4 cut(s) 72, 202, 570, 700
BanI GGYRCC 5 cut(s) 61, 242, 346, 559, 740
BbsI GAAGAC 2 cut(s) 109, 607
BbvI GCAGC 5 cut(s) 20, 115, 436, 519, 613
BccI CCATC 2 cut(s) 330, 370
BceAI ACGGC 2 cut(s) 49, 547
BcgI CGANNNNNNTGC 2 cut(s) 706, 740
BciT130I CCWGG 7 cut(s) 97, 239, 355, 590, 595, 704, 737
BcnI CCSGG 4 cut(s) 142, 173, 497, 671
BcoDI GTCTC 1 cut(s) 286
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 1 cut(s) 338
BfoI RGCGCY 2 cut(s) 65, 563
Bme18I GGWCC 4 cut(s) 72, 202, 570, 700
BmgT120I GGNCC 6 cut(s) 72, 169, 202, 570, 667, 700
BmiI GGNNCC 6 cut(s) 63, 244, 348, 486, 561, 742
BmsI GCATC 2 cut(s) 90, 588
BpiI GAAGAC 2 cut(s) 109, 607
BpuMI CCSGG 4 cut(s) 142, 173, 497, 671
BsaHI GRCGYC 5 cut(s) 62, 426, 439, 455, 560
BsaJI CCNNGG 4 cut(s) 238, 353, 495, 736
BsaWI WCCGGW 3 cut(s) 38, 537, 638
BsaXI ACNNNNNCTCC 8 cut(s) 59, 89, 373, 386, 403, 416, 557, 587
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 411, 435
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 74, 572
BseAI TCCGGA 2 cut(s) 38, 537
BseBI CCWGG 7 cut(s) 97, 239, 355, 590, 595, 704, 737
BseDI CCNNGG 4 cut(s) 238, 353, 495, 736
BseGI GGATG 2 cut(s) 105, 603
BseLI CCNNNNNNNGG 3 cut(s) 141, 411, 435
BseNI ACTGG 2 cut(s) 74, 572
BseRI GAGGAG 3 cut(s) 126, 477, 624
BseXI GCAGC 5 cut(s) 20, 115, 436, 519, 613
BseYI CCCAGC 2 cut(s) 106, 604
BshFI GGCC 3 cut(s) 171, 593, 669
BshNI GGYRCC 5 cut(s) 61, 242, 346, 559, 740
BsiSI CCGG 9 cut(s) 39, 141, 172, 263, 482, 497, 538, 639, 670
BslFI GGGAC 2 cut(s) 188, 686
BslI CCNNNNNNNGG 3 cut(s) 141, 411, 435
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 188, 686
BsnI GGCC 3 cut(s) 171, 593, 669
Bsp13I TCCGGA 2 cut(s) 38, 537
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 6 cut(s) 59, 344, 429, 452, 470, 557
BspANI GGCC 3 cut(s) 171, 593, 669
BspEI TCCGGA 2 cut(s) 38, 537
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 6 cut(s) 63, 244, 348, 486, 561, 742
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 5 cut(s) 61, 242, 346, 559, 740
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 74, 572
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 4 cut(s) 238, 353, 495, 736
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 5 cut(s) 62, 426, 439, 455, 560
Bst2UI CCWGG 7 cut(s) 97, 239, 355, 590, 595, 704, 737
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 46
BstACI GRCGYC 5 cut(s) 62, 426, 439, 455, 560
BstAPI GCANNNNNTGC 2 cut(s) 33, 532
BstF5I GGATG 2 cut(s) 105, 603
BstH2I RGCGCY 2 cut(s) 65, 563
BstHHI GCGC 3 cut(s) 64, 268, 562
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 33, 532
BstNI CCWGG 7 cut(s) 97, 239, 355, 590, 595, 704, 737
BstV1I GCAGC 5 cut(s) 20, 115, 436, 519, 613
BstV2I GAAGAC 2 cut(s) 109, 607
BsuRI GGCC 3 cut(s) 171, 593, 669
BtsCI GGATG 2 cut(s) 105, 603
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 274, 365
CaiI CAGNNNCTG 2 cut(s) 33, 532
CciI TCATGA 1 cut(s) 216
CfoI GCGC 3 cut(s) 64, 268, 562
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 6 cut(s) 72, 169, 202, 570, 667, 700
CseI GACGC 7 cut(s) 39, 139, 428, 434, 444, 538, 637
Csp6I GTAC 3 cut(s) 67, 467, 565
CviAII CATG 3 cut(s) 217, 299, 435
CviQI GTAC 3 cut(s) 67, 467, 565
DinI GGCGCC 2 cut(s) 63, 561
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco47I GGWCC 4 cut(s) 72, 202, 570, 700
EcoRI GAATTC 2 cut(s) 258, 756
EcoRII CCWGG 7 cut(s) 95, 237, 353, 588, 593, 702, 735
EgeI GGCGCC 2 cut(s) 63, 561
EheI GGCGCC 2 cut(s) 63, 561
FaeI CATG 3 cut(s) 220, 302, 438
FaiI YATR 5 cut(s) 218, 270, 300, 436, 766
FaqI GGGAC 2 cut(s) 188, 686
FatI CATG 3 cut(s) 216, 298, 434
FokI GGATG 2 cut(s) 112, 610
FspBI CTAG 1 cut(s) 338
GlaI GCGC 3 cut(s) 63, 267, 561
GsaI CCCAGC 2 cut(s) 110, 608
HaeII RGCGCY 2 cut(s) 65, 563
HaeIII GGCC 3 cut(s) 171, 593, 669
HapII CCGG 9 cut(s) 39, 141, 172, 263, 482, 497, 538, 639, 670
HgaI GACGC 7 cut(s) 39, 139, 428, 434, 444, 538, 637
HhaI GCGC 3 cut(s) 64, 268, 562
Hin1I GRCGYC 5 cut(s) 62, 426, 439, 455, 560
Hin1II CATG 3 cut(s) 220, 302, 438
Hin6I GCGC 3 cut(s) 62, 266, 560
HinP1I GCGC 3 cut(s) 62, 266, 560
HinfI GANTC 6 cut(s) 44, 114, 461, 543, 612, 642
HpaII CCGG 9 cut(s) 39, 141, 172, 263, 482, 497, 538, 639, 670
Hpy188I TCNGA 6 cut(s) 21, 79, 460, 492, 520, 577
Hpy188III TCNNGA 6 cut(s) 39, 48, 217, 538, 547, 715
Hpy99I CGWCG 6 cut(s) 83, 155, 428, 444, 581, 653
HpyAV CCTTC 4 cut(s) 131, 405, 544, 629
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 27, 103, 526, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 532
Hsp92I GRCGYC 5 cut(s) 62, 426, 439, 455, 560
Hsp92II CATG 3 cut(s) 220, 302, 438
HspAI GCGC 3 cut(s) 62, 266, 560
KasI GGCGCC 2 cut(s) 61, 559
Kpn2I TCCGGA 2 cut(s) 38, 537
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 4 cut(s) 41, 490, 540, 706
Lsp1109I GCAGC 5 cut(s) 20, 115, 436, 519, 613
LweI GCATC 2 cut(s) 90, 588
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 272, 326
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 4 cut(s) 63, 109, 429, 607
MfeI CAATTG 1 cut(s) 722
MluCI AATT 6 cut(s) 160, 258, 658, 710, 722, 756
Mly113I GGCGCC 2 cut(s) 62, 560
MlyI GAGTC 3 cut(s) 123, 455, 621
MmeI TCCRAC 3 cut(s) 102, 515, 600
MnlI CCTC 8 cut(s) 6, 49, 85, 104, 498, 505, 583, 602
MroI TCCGGA 2 cut(s) 38, 537
MspA1I CMGCKG 2 cut(s) 106, 604
MspI CCGG 9 cut(s) 39, 141, 172, 263, 482, 497, 538, 639, 670
MunI CAATTG 1 cut(s) 722
MvaI CCWGG 7 cut(s) 97, 239, 355, 590, 595, 704, 737
MwoI GCNNNNNNNGC 2 cut(s) 33, 532
NarI GGCGCC 2 cut(s) 62, 560
NciI CCSGG 4 cut(s) 142, 173, 497, 671
NdeII GATC 1 cut(s) 144
NlaIII CATG 3 cut(s) 220, 302, 438
NlaIV GGNNCC 6 cut(s) 63, 244, 348, 486, 561, 742
NmuCI GTSAC 2 cut(s) 272, 326
PagI TCATGA 1 cut(s) 216
PfeI GAWTC 3 cut(s) 44, 543, 642
PflFI GACNNNGTC 1 cut(s) 584
PleI GAGTC 3 cut(s) 122, 455, 620
PluTI GGCGCC 2 cut(s) 65, 563
PpsI GAGTC 3 cut(s) 122, 455, 620
Psp6I CCWGG 7 cut(s) 95, 237, 353, 588, 593, 702, 735
PspFI CCCAGC 2 cut(s) 106, 604
PspGI CCWGG 7 cut(s) 95, 237, 353, 588, 593, 702, 735
PspN4I GGNNCC 6 cut(s) 63, 244, 348, 486, 561, 742
PspPI GGNCC 6 cut(s) 72, 169, 202, 570, 667, 700
PstNI CAGNNNCTG 2 cut(s) 33, 532
PsyI GACNNNGTC 1 cut(s) 584
PvuII CAGCTG 2 cut(s) 106, 604
RsaI GTAC 3 cut(s) 68, 468, 566
RsaNI GTAC 3 cut(s) 67, 467, 565
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 6 cut(s) 72, 169, 202, 570, 667, 700
SchI GAGTC 3 cut(s) 123, 455, 621
SetI ASST 6 cut(s) 108, 240, 359, 555, 606, 738
SfaNI GCATC 2 cut(s) 90, 588
SfoI GGCGCC 2 cut(s) 63, 561
SinI GGWCC 4 cut(s) 72, 202, 570, 700
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 6 cut(s) 160, 258, 658, 710, 722, 756
SsiI CCGC 6 cut(s) 59, 344, 429, 452, 470, 557
SspDI GGCGCC 2 cut(s) 61, 559
SspMI CTAG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 278
TasI AATT 6 cut(s) 160, 258, 658, 710, 722, 756
TauI GCSGC 5 cut(s) 62, 347, 431, 455, 560
TfiI GAWTC 3 cut(s) 44, 543, 642
TscAI CASTG 2 cut(s) 281, 372
TseFI GTSAC 2 cut(s) 272, 326
TseI GCWGC 5 cut(s) 33, 103, 449, 532, 601
Tsp45I GTSAC 2 cut(s) 272, 326
TspDTI ATGAA 3 cut(s) 205, 233, 423
TspGWI ACGGA 2 cut(s) 394, 750
TspRI CASTG 2 cut(s) 281, 372
Tth111I GACNNNGTC 1 cut(s) 584
VpaK11BI GGWCC 4 cut(s) 72, 202, 570, 700
XapI RAATTY 2 cut(s) 258, 756
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 601
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.