Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

16656530 .. 16658216

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGTCGGGACTTCTACAATGTCCTTGCCAGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGTGAGGACCAATTGCTGCTCTTTCGCTTAGTTATAGATATACTAGATGTATATTACCATTTTGGGTTCATTGTCAACTTAGTCTGCAGTTTGATTGATTTCGGCCTCTACATTAGGGTTCAAGTGCTTATCGTCTATATTTTTGTGTTGCGGAATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGGAGCGTTATTACATTGACCATTACCTGAGCAACCAAACATTTACAGAATTCAATCCCAATCAATCATTGATAATCCAGATCAGCGAATTGTTGATGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran SbmA_BacA

Protein Analysis

152

Amino Acids

17.8

Weight (kDa)

5.84

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	154, 404
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	61, 281, 409
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	4, 175
ApoI	RAATTY	2 cut(s)	154, 404
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	16, 162
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	2 cut(s)	5, 176
BlsI	GCNGC	2 cut(s)	6, 177
Bme1390I	CCNGG	2 cut(s)	43, 135
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	43, 135
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	16, 162
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	42, 159
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	45, 347, 435, 453
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	4 cut(s)	45, 347, 435, 453
Bst2UI	CCWGG	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	187, 238, 383
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	48, 350, 438, 456
BstMBI	GATC	4 cut(s)	45, 347, 435, 453
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	41, 133
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	16, 162
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	3 cut(s)	7, 57, 264
CviKI_1	RGCY	3 cut(s)	7, 57, 264
DdeI	CTNAG	3 cut(s)	187, 238, 383
DpnI	GATC	4 cut(s)	47, 349, 437, 455
DpnII	GATC	4 cut(s)	45, 347, 435, 453
Eco47I	GGWCC	1 cut(s)	166
EcoRI	GAATTC	2 cut(s)	154, 404
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	114, 194, 200, 211, 297, 318
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	5, 176
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	5, 176
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	5, 176
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	2 cut(s)	42, 159
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	2 cut(s)	42, 159
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	74, 113, 433
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	4, 246, 320
HpyF3I	CTNAG	3 cut(s)	187, 238, 383
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	45, 347, 435, 453
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	53, 55, 109, 120, 133, 147, 172, 395, 446
Lsp1109I	GCAGC	2 cut(s)	16, 162
MaeI	CTAG	1 cut(s)	203
MalI	GATC	4 cut(s)	47, 349, 437, 455
MboI	GATC	4 cut(s)	45, 347, 435, 453
MboII	GAAGA	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	6 cut(s)	61, 154, 170, 313, 404, 443
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	4 cut(s)	5, 157, 275, 333
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	2 cut(s)	42, 159
MspR9I	CCNGG	2 cut(s)	43, 135
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	135
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	45, 347, 435, 453
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	6, 177
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	7
SatI	GCNGC	2 cut(s)	5, 176
Sau3AI	GATC	4 cut(s)	45, 347, 435, 453
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	43, 135
SetI	ASST	4 cut(s)	9, 136, 344, 384
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	6 cut(s)	61, 154, 170, 313, 404, 443
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	41, 133
TasI	AATT	6 cut(s)	61, 154, 170, 313, 404, 443
TseI	GCWGC	2 cut(s)	4, 175
TspDTI	ATGAA	3 cut(s)	101, 129, 217
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	154, 404
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.