Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

8192828 .. 8193555

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13622.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATAACACTGGCTGCTCAAACTCTCTACGTCTCACTGTGCTTGACTCATGGCTACTCCACCCACCACTCCCACCATCACATTAAATCACTAGTAGTCACAACACCCACGCTTCCCTCATCCCTCCACACAATGCCAATCAGAAGGAGACGAAACGACGCCGCTTCATGGCGTTGTGCCGCGGCCGCGTCTGACTCGGTTCCACAACCGCCGCCGCCAACTCCGCCGGAAAAGCAAAGGGAAGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGGTGGCGGCGCCGTACTGGTCCTCCGACGACAAGGTCCAGGCGAGGATGCAGCTCGGCGGAGTGTTTCTTCTCACTCTCGCCACCACCGGAATCAGCGTCGGCTTCAATTTCCTCGGCCGTGACTTCTACAATGCCCTCGCCAATAAGGACCAAGAGCAGTTCATGAAGCAATTGCTGTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGATGAGCACCAATCGCTGCTCTTTCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

174

Amino Acids

19.24

Weight (kDa)

9.62

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	289, 470
AccII	CGCG	2 cut(s)	182, 188
AccIII	TCCGGA	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	183, 397
AcsI	RAATTY	1 cut(s)	486
AcyI	GRCGYC	2 cut(s)	159, 290
AfaI	GTAC	2 cut(s)	296, 461
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	318, 465
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	37, 142
AlwNI	CAGNNNCTG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	2 cut(s)	183, 397
ApeKI	GCWGC	4 cut(s)	14, 262, 331, 507
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	300, 316, 430
AvaII	GGWCC	3 cut(s)	300, 316, 430
BanI	GGYRCC	2 cut(s)	289, 470
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	249, 343, 494
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	2 cut(s)	277, 384
BciT130I	CCWGG	2 cut(s)	320, 467
BcoDI	GTCTC	2 cut(s)	37, 142
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	320, 467
Bme18I	GGWCC	3 cut(s)	300, 316, 430
BmgT120I	GGNCC	3 cut(s)	300, 316, 430
BmiI	GGNNCC	3 cut(s)	201, 291, 472
BmrFI	CCNGG	2 cut(s)	320, 467
BmsI	GCATC	1 cut(s)	318
BsaHI	GRCGYC	2 cut(s)	159, 290
BsaJI	CCNNGG	3 cut(s)	180, 394, 466
BsaWI	WCCGGW	2 cut(s)	267, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	15, 302
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	320, 467
BseDI	CCNNGG	3 cut(s)	180, 394, 466
BseGI	GGATG	2 cut(s)	119, 333
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	15, 302
BseX3I	CGGCCG	2 cut(s)	183, 397
BseXI	GCAGC	3 cut(s)	249, 343, 494
Bsh1236I	CGCG	2 cut(s)	182, 188
Bsh1285I	CGRYCG	2 cut(s)	186, 400
BshFI	GGCC	2 cut(s)	185, 399
BshNI	GGYRCC	2 cut(s)	289, 470
BsiEI	CGRYCG	2 cut(s)	186, 400
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	227, 268, 369
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	37, 142
BsmBI	CGTCTC	2 cut(s)	37, 142
BsnI	GGCC	2 cut(s)	185, 399
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	267
BspANI	GGCC	2 cut(s)	185, 399
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	182, 188
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	201, 291, 472
BspT107I	GGYRCC	2 cut(s)	289, 470
BsrI	ACTGG	2 cut(s)	15, 302
BssECI	CCNNGG	3 cut(s)	180, 394, 466
BssNI	GRCGYC	2 cut(s)	159, 290
Bst2UI	CCWGG	2 cut(s)	320, 467
Bst4CI	ACNGT	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	159, 290
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	119, 333
BstFNI	CGCG	2 cut(s)	182, 188
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	37, 142
BstMCI	CGRYCG	2 cut(s)	186, 400
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 223, 232, 262, 504
BstNI	CCWGG	2 cut(s)	320, 467
BstSCI	CCNGG	2 cut(s)	318, 465
BstUI	CGCG	2 cut(s)	182, 188
BstV1I	GCAGC	3 cut(s)	249, 343, 494
BstZI	CGGCCG	2 cut(s)	183, 397
BsuRI	GGCC	2 cut(s)	185, 399
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	119, 333
BtsIMutI	CAGTG	2 cut(s)	8, 35
CaiI	CAGNNNCTG	1 cut(s)	262
CciI	TCATGA	1 cut(s)	444
CciNI	GCGGCCGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	300, 316, 430
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	4 cut(s)	167, 177, 268, 367
Csp6I	GTAC	2 cut(s)	295, 460
CviAII	CATG	3 cut(s)	50, 168, 445
CviJI	RGCY	6 cut(s)	14, 54, 185, 334, 384, 399
CviKI_1	RGCY	6 cut(s)	14, 54, 185, 334, 384, 399
CviQI	GTAC	2 cut(s)	295, 460
DdeI	CTNAG	1 cut(s)	519
DinI	GGCGCC	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	183, 397
EagI	CGGCCG	2 cut(s)	183, 397
EciI	GGCGGA	2 cut(s)	213, 354
EclXI	CGGCCG	2 cut(s)	183, 397
Eco47I	GGWCC	3 cut(s)	300, 316, 430
Eco52I	CGGCCG	2 cut(s)	183, 397
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	318, 465
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
Esp3I	CGTCTC	2 cut(s)	37, 142
FaeI	CATG	3 cut(s)	53, 171, 448
FaiI	YATR	3 cut(s)	51, 169, 446
FatI	CATG	3 cut(s)	49, 167, 444
FokI	GGATG	2 cut(s)	106, 340
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	185, 399
HapII	CCGG	3 cut(s)	227, 268, 369
HgaI	GACGC	4 cut(s)	167, 177, 268, 367
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	2 cut(s)	159, 290
Hin1II	CATG	3 cut(s)	53, 171, 448
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	4 cut(s)	46, 194, 273, 372
HpaII	CCGG	3 cut(s)	227, 268, 369
Hpy188I	TCNGA	5 cut(s)	143, 193, 250, 307, 492
Hpy188III	TCNNGA	3 cut(s)	268, 277, 445
Hpy99I	CGWCG	3 cut(s)	161, 311, 383
HpyAV	CCTTC	3 cut(s)	138, 236, 274
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	256, 331
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 223, 232, 262, 504
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	2 cut(s)	159, 290
Hsp92II	CATG	3 cut(s)	53, 171, 448
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	267
KspI	CCGCGG	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	3 cut(s)	249, 343, 494
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	97, 401
MboII	GAAGA	1 cut(s)	341
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	3 cut(s)	388, 452, 486
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	40, 188
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	127, 134, 313, 318, 404, 428
MroI	TCCGGA	1 cut(s)	267
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	227, 268, 369
MspR9I	CCNGG	2 cut(s)	320, 467
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	320, 467
MvnI	CGCG	2 cut(s)	182, 188
MwoI	GCNNNNNNNGC	5 cut(s)	185, 223, 232, 262, 504
NarI	GGCGCC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	53, 171, 448
NlaIV	GGNNCC	3 cut(s)	201, 291, 472
NmeAIII	GCCGAG	2 cut(s)	315, 375
NmuCI	GTSAC	2 cut(s)	97, 401
NotI	GCGGCCGC	1 cut(s)	183
PagI	TCATGA	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	273, 372
PflFI	GACNNNGTC	1 cut(s)	314
PleI	GAGTC	2 cut(s)	40, 188
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	2 cut(s)	40, 188
Psp6I	CCWGG	2 cut(s)	318, 465
PspGI	CCWGG	2 cut(s)	318, 465
PspN4I	GGNNCC	3 cut(s)	201, 291, 472
PspPI	GGNCC	3 cut(s)	300, 316, 430
PstNI	CAGNNNCTG	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	296, 461
RsaNI	GTAC	2 cut(s)	295, 460
SacII	CCGCGG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	300, 316, 430
SchI	GAGTC	2 cut(s)	40, 188
ScrFI	CCNGG	2 cut(s)	320, 467
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	6 cut(s)	33, 247, 285, 318, 336, 468
SfaNI	GCATC	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	300, 316, 430
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	3 cut(s)	388, 452, 486
SspDI	GGCGCC	1 cut(s)	289
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	318, 465
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	33
TasI	AATT	3 cut(s)	388, 452, 486
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	7 cut(s)	164, 182, 185, 188, 214, 217, 290
TfiI	GAWTC	2 cut(s)	273, 372
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	15, 42
TseFI	GTSAC	2 cut(s)	97, 401
TseI	GCWGC	4 cut(s)	14, 262, 331, 507
Tsp45I	GTSAC	2 cut(s)	97, 401
TspDTI	ATGAA	3 cut(s)	156, 433, 461
TspRI	CASTG	2 cut(s)	15, 42
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	3 cut(s)	300, 316, 430
XapI	RAATTY	1 cut(s)	486
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.