Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

16836873 .. 16839411

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGAACAAGACATTACCTTACATTGCCCAGTCAAATTCCCTCGATTCAAAAGACCAGTTTCCATTTTACATCGAGATTGACTCTGTACCGCCACCGCCACGTGCTCCTCCAACCCTGGATAAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGTGCCGTACTGGTCCTCCGACGACAAGGTCCAGGTCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCATCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGTCGGGACTTCCACAATGCCCTTGCCAGTCAGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGTGAGCACCAATCGCTGCTCTTTCGCTTAGATTTTTGTGTTGCGGAATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGGAGCGTTATTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

162

Amino Acids

18.51

Weight (kDa)

9.45

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	181, 360
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	4 cut(s)	91, 97, 179, 425
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	36, 376
AcvI	CACGTG	1 cut(s)	103
AfaI	GTAC	2 cut(s)	89, 188
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	50, 279
AjnI	CCWGG	3 cut(s)	116, 210, 355
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	2 cut(s)	108, 390
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	153
Aor13HI	TCCGGA	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	153, 223, 397
ApoI	RAATTY	2 cut(s)	36, 376
AspS9I	GGNCC	2 cut(s)	192, 208
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	192, 208
BanI	GGYRCC	2 cut(s)	181, 360
BbrPI	CACGTG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	108, 390
BbvI	GCAGC	3 cut(s)	140, 235, 384
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	3 cut(s)	118, 212, 357
BcnI	CCSGG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	3 cut(s)	154, 224, 398
BlsI	GCNGC	3 cut(s)	155, 225, 399
Bme1390I	CCNGG	4 cut(s)	118, 212, 261, 357
Bme18I	GGWCC	2 cut(s)	192, 208
BmgT120I	GGNCC	2 cut(s)	192, 208
BmiI	GGNNCC	2 cut(s)	183, 362
BmrFI	CCNGG	4 cut(s)	118, 212, 261, 357
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpuMI	CCSGG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	116, 356
BsaWI	WCCGGW	2 cut(s)	158, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	4 cut(s)	30, 57, 194, 314
Bse3DI	GCAATG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	3 cut(s)	118, 212, 357
BseDI	CCNNGG	2 cut(s)	116, 356
BseGI	GGATG	2 cut(s)	225, 475
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	23
BseNI	ACTGG	4 cut(s)	30, 57, 194, 314
BseRI	GAGGAG	2 cut(s)	98, 246
BseXI	GCAGC	3 cut(s)	140, 235, 384
BseYI	CCCAGC	1 cut(s)	226
BshNI	GGYRCC	2 cut(s)	181, 360
BsiHKAI	GWGCWC	2 cut(s)	108, 390
BsiSI	CCGG	3 cut(s)	159, 260, 381
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	108, 390
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	263, 462
BspACI	CCGC	4 cut(s)	91, 97, 179, 425
BspEI	TCCGGA	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	183, 362
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	2 cut(s)	181, 360
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	4 cut(s)	30, 57, 194, 314
BssECI	CCNNGG	2 cut(s)	116, 356
BssMI	GATC	2 cut(s)	263, 462
Bst2UI	CCWGG	3 cut(s)	118, 212, 357
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	225, 475
BstKTI	GATC	2 cut(s)	266, 465
BstMBI	GATC	2 cut(s)	263, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 394
BstNI	CCWGG	3 cut(s)	118, 212, 357
BstSCI	CCNGG	4 cut(s)	116, 210, 259, 355
BstV1I	GCAGC	3 cut(s)	140, 235, 384
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	225, 475
CaiI	CAGNNNCTG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	192, 208
CseI	GACGC	2 cut(s)	159, 258
Csp6I	GTAC	2 cut(s)	88, 187
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	2 cut(s)	226, 275
CviKI_1	RGCY	2 cut(s)	226, 275
CviQI	GTAC	2 cut(s)	88, 187
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	265, 464
DpnII	GATC	2 cut(s)	263, 462
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	192, 208
Eco72I	CACGTG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	3 cut(s)	116, 210, 355
FaeI	CATG	1 cut(s)	338
FaiI	YATR	2 cut(s)	336, 433
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	154, 224, 398
FokI	GGATG	2 cut(s)	232, 482
Fsp4HI	GCNGC	3 cut(s)	154, 224, 398
GluI	GCNGC	3 cut(s)	154, 224, 398
GsaI	CCCAGC	1 cut(s)	230
HapII	CCGG	3 cut(s)	159, 260, 381
HgaI	GACGC	2 cut(s)	159, 258
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	4 cut(s)	46, 82, 164, 234
HpaII	CCGG	3 cut(s)	159, 260, 381
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	141, 199, 320
Hpy188III	TCNNGA	6 cut(s)	75, 159, 168, 217, 292, 335
Hpy99I	CGWCG	2 cut(s)	203, 274
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	147, 223, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 394
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	338
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	263, 462
LmnI	GCTCC	3 cut(s)	111, 161, 473
Lsp1109I	GCAGC	3 cut(s)	140, 235, 384
LweI	GCATC	1 cut(s)	210
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	265, 464
MboI	GATC	2 cut(s)	263, 462
MboII	GAAGA	2 cut(s)	183, 229
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	108, 390
MluCI	AATT	4 cut(s)	36, 279, 376, 428
MlyI	GAGTC	2 cut(s)	76, 243
MmeI	TCCRAC	2 cut(s)	136, 222
MnlI	CCTC	7 cut(s)	52, 119, 126, 169, 205, 224, 448
MroI	TCCGGA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	3 cut(s)	159, 260, 381
MspR9I	CCNGG	4 cut(s)	118, 212, 261, 357
MvaI	CCWGG	3 cut(s)	118, 212, 357
MwoI	GCNNNNNNNGC	2 cut(s)	153, 394
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	263, 462
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	2 cut(s)	183, 362
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	46, 164
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	155, 225, 399
PleI	GAGTC	2 cut(s)	76, 242
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
PpsI	GAGTC	2 cut(s)	76, 242
Ppu21I	YACGTR	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	116, 210, 355
PspCI	CACGTG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	3 cut(s)	116, 210, 355
PspN4I	GGNNCC	2 cut(s)	183, 362
PspPI	GGNCC	2 cut(s)	192, 208
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	89, 188
RsaNI	GTAC	2 cut(s)	88, 187
SatI	GCNGC	3 cut(s)	154, 224, 398
Sau3AI	GATC	2 cut(s)	263, 462
Sau96I	GGNCC	2 cut(s)	192, 208
SchI	GAGTC	2 cut(s)	76, 243
ScrFI	CCNGG	4 cut(s)	118, 212, 261, 357
SduI	GDGCHC	2 cut(s)	108, 390
SetI	ASST	7 cut(s)	21, 105, 210, 216, 228, 358, 459
SfaNI	GCATC	1 cut(s)	210
SinI	GGWCC	2 cut(s)	192, 208
Sse9I	AATT	4 cut(s)	36, 279, 376, 428
SsiI	CCGC	4 cut(s)	91, 97, 179, 425
StyD4I	CCNGG	4 cut(s)	116, 210, 259, 355
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	44, 74
TasI	AATT	4 cut(s)	36, 279, 376, 428
TfiI	GAWTC	2 cut(s)	46, 164
TseI	GCWGC	3 cut(s)	153, 223, 397
TspDTI	ATGAA	2 cut(s)	323, 351
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	192, 208
XapI	RAATTY	2 cut(s)	36, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.