RLG00000035289

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001312
Physical Location & Seq
Reverse (-)
64377529 .. 64380519
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035289

Sequence Viewer

Length: 588 bp
ATGTTTTATCTCACATTCCACTCGAGATCTACTACTCATGGCTACTCCCCCCACCAGTTCCATCGTCACATTAGACTAGTAGTGGCACCACCCAGGTTTCCATCACTGCCCACCACTACCCGCAACAGAAACTCCGTTAGAAGAAGAAGAAACGACGCCGCTTCATGGCGTCGTTCTGCTGCGGTGTCTGACTCTGTACCGCCACCACCTGCCCCTCCAACGCCGCAAAAGCAAAGAGAGGGCTCCGATTTGCAGACGCTGCTTCGGAGATTCTGGAAGGTGGCGACGCCATCAGGAGCAATTCATGAAGCAACTGCTTTACTAACTGGGTGCCTTTGCTGGTGGAATTCCGGTGGGCACCAATCGCTGCTCTTTCGCTTAGATTTTTGTGTTGCGGGATTATGCAAGGGAAACTCTTTCCTTGAGGGTTTGGTGACATTAAACTTCTTGCAAGAGAAAACGGAAGCAGATTTTCGTTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCGATAGCTTTCTATAGTGGTGAAGCCAAAGAAATGCAACTTTTGCTGCAACGCTTCAAAGTGCTTTTGAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran SbmA_BacA

Protein Analysis

196

Amino Acids

22.24

Weight (kDa)

10.48

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 138 - 193 4.1e-13 ABC transporter transmembrane region 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 3 cut(s) 85, 330, 357
AccII CGCG 1 cut(s) 492
AciI CCGC 6 cut(s) 121, 159, 182, 200, 224, 395
AcsI RAATTY 1 cut(s) 346
AcyI GRCGYC 3 cut(s) 156, 169, 287
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 568
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 22
ApeKI GCWGC 4 cut(s) 179, 259, 367, 556
ApoI RAATTY 1 cut(s) 346
AspLEI GCGC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 445, 542
AvaI CYCGRG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 360
BanI GGYRCC 3 cut(s) 85, 330, 357
BanII GRGCYC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 166, 246, 354, 543
BccI CCATC 3 cut(s) 69, 109, 298
BciT130I CCWGG 1 cut(s) 94
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 217
BglII AGATCT 1 cut(s) 26
BisI GCNGC 6 cut(s) 159, 180, 224, 260, 368, 557
BlsI GCNGC 6 cut(s) 160, 181, 225, 261, 369, 558
Bme1390I CCNGG 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 22
BmiI GGNNCC 4 cut(s) 87, 244, 332, 359
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 512
BsaHI GRCGYC 3 cut(s) 156, 169, 287
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 55, 331
BseBI CCWGG 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 55, 331
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 4 cut(s) 166, 246, 354, 543
Bsh1236I CGCG 1 cut(s) 492
BshNI GGYRCC 3 cut(s) 85, 330, 357
BshVI ATCGAT 1 cut(s) 512
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 245, 360
Bsp143I GATC 1 cut(s) 26
BspACI CCGC 6 cut(s) 121, 159, 182, 200, 224, 395
BspDI ATCGAT 1 cut(s) 512
BspFNI CGCG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 4 cut(s) 87, 244, 332, 359
BspMI ACCTGC 1 cut(s) 217
BspT107I GGYRCC 3 cut(s) 85, 330, 357
BsrI ACTGG 2 cut(s) 55, 331
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 26
BssNI GRCGYC 3 cut(s) 156, 169, 287
Bst2UI CCWGG 1 cut(s) 94
BstACI GRCGYC 3 cut(s) 156, 169, 287
BstAPI GCANNNNNTGC 2 cut(s) 259, 553
BstDEI CTNAG 1 cut(s) 379
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 229, 259, 364, 553
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 166, 246, 354, 543
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 512
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 104
BveI ACCTGC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 492
ClaI ATCGAT 1 cut(s) 512
CseI GACGC 4 cut(s) 158, 164, 265, 295
Csp6I GTAC 1 cut(s) 197
CviAII CATG 3 cut(s) 38, 165, 305
CviJI RGCY 4 cut(s) 42, 243, 518, 536
CviKI_1 RGCY 4 cut(s) 42, 243, 518, 536
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 379
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 3 cut(s) 41, 168, 308
FaiI YATR 6 cut(s) 39, 166, 306, 403, 480, 525
FatI CATG 3 cut(s) 37, 164, 304
FauI CCCGC 2 cut(s) 128, 388
Fnu4HI GCNGC 6 cut(s) 159, 180, 224, 260, 368, 557
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 6 cut(s) 159, 180, 224, 260, 368, 557
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 491
GluI GCNGC 6 cut(s) 159, 180, 224, 260, 368, 557
HapII CCGG 1 cut(s) 351
HgaI GACGC 4 cut(s) 158, 164, 265, 295
HhaI GCGC 1 cut(s) 492
Hin1I GRCGYC 3 cut(s) 156, 169, 287
Hin1II CATG 3 cut(s) 41, 168, 308
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 4 cut(s) 191, 270, 509, 582
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 445, 542
Hpy188I TCNGA 3 cut(s) 190, 247, 267
Hpy188III TCNNGA 5 cut(s) 24, 274, 294, 305, 497
Hpy99I CGWCG 3 cut(s) 158, 174, 289
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 253, 405, 451, 547, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 259, 364, 553
HpyF3I CTNAG 1 cut(s) 379
Hsp92I GRCGYC 3 cut(s) 156, 169, 287
Hsp92II CATG 3 cut(s) 41, 168, 308
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 248, 296
LpnPI CCDG 9 cut(s) 68, 79, 106, 222, 259, 279, 312, 325, 364
Lsp1109I GCAGC 4 cut(s) 166, 246, 354, 543
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 65, 433
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 3 cut(s) 153, 156, 159
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 245, 360
MluCI AATT 2 cut(s) 300, 346
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 3 cut(s) 225, 232, 418
MseI TTAA 1 cut(s) 440
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 4 cut(s) 229, 259, 364, 553
NdeII GATC 1 cut(s) 26
NlaIII CATG 3 cut(s) 41, 168, 308
NlaIV GGNNCC 4 cut(s) 87, 244, 332, 359
NmuCI GTSAC 2 cut(s) 65, 433
PaeR7I CTCGAG 1 cut(s) 22
PagI TCATGA 1 cut(s) 304
PaqCI CACCTGC 1 cut(s) 217
PfeI GAWTC 3 cut(s) 270, 509, 582
PkrI GCNGC 6 cut(s) 160, 181, 225, 261, 369, 558
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 87, 244, 332, 359
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 6 cut(s) 159, 180, 224, 260, 368, 557
Sau3AI GATC 1 cut(s) 26
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 245, 360
SetI ASST 4 cut(s) 98, 211, 282, 520
SfcI CTRYAG 1 cut(s) 523
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 2 cut(s) 22, 422
SmoI CTYRAG 2 cut(s) 22, 422
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 2 cut(s) 300, 346
SsiI CCGC 6 cut(s) 121, 159, 182, 200, 224, 395
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 92
TaqI TCGA 3 cut(s) 23, 496, 512
TasI AATT 2 cut(s) 300, 346
TauI GCSGC 2 cut(s) 161, 226
TfiI GAWTC 3 cut(s) 270, 509, 582
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 65, 433
TseI GCWGC 4 cut(s) 179, 259, 367, 556
Tsp45I GTSAC 2 cut(s) 65, 433
TspDTI ATGAA 3 cut(s) 153, 293, 321
TspGWI ACGGA 2 cut(s) 124, 476
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 22
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.