Rmu_sc0000103.1_g000055

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
OG0001312
Physical Location & Seq
Reverse (-)
274933 .. 275751
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000103.1_g000055.1.cds

Sequence Viewer

Length: 342 bp
atgcatactgtactggtgacaggacctagcgggagtggtaagacttatttgttaagaattttggctggtctttggagtgctggaagaggaaagattacattctatgtggaagatgaagaagagcttgtaccatccaattctccaggtgtaggtcctcttggggaaagacgagcaatgcagcttgcagatgaattgatggctgtgaagtctactgcaggtcagcaaaatgaggagttagagacggtcaaagctggtgcagctcaacaaaatgaagagttagaggcagtgaaggttagagccgctcaacaaaatgaagagttggaggcactaaaggcaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

113

Amino Acids

12.16

Weight (kDa)

4.92

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 209
AciI CCGC 2 cut(s) 30, 300
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 2 cut(s) 12, 129
AfiI CCNNNNNNNGG 1 cut(s) 149
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 124, 181, 251, 260
AluI AGCT 4 cut(s) 124, 181, 251, 260
Alw26I GTCTC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 178, 257
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 23, 152
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 23, 152
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbvI GCAGC 2 cut(s) 190, 269
BccI CCATC 2 cut(s) 139, 190
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 179, 258, 300
BlsI GCNGC 3 cut(s) 180, 259, 301
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 23, 152
BmgT120I GGNCC 2 cut(s) 23, 152
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 190, 269
BsgI GTGCAG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BspACI CCGC 2 cut(s) 30, 300
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 10, 244
Bst6I CTCTTC 4 cut(s) 79, 114, 267, 309
BstC8I GCNNGC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 257, 332
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 190, 269
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 23, 152
Csp6I GTAC 2 cut(s) 11, 128
CviJI RGCY 7 cut(s) 65, 124, 181, 200, 251, 260, 299
CviKI_1 RGCY 7 cut(s) 65, 124, 181, 200, 251, 260, 299
CviQI GTAC 2 cut(s) 11, 128
Eam1104I CTCTTC 4 cut(s) 79, 114, 267, 309
EarI CTCTTC 4 cut(s) 79, 114, 267, 309
Eco47I GGWCC 2 cut(s) 23, 152
EcoO109I RGGNCCY 2 cut(s) 23, 152
EcoRII CCWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 2 cut(s) 6, 105
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FauI CCCGC 1 cut(s) 23
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 179, 258, 300
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 179, 258, 300
FspBI CTAG 1 cut(s) 27
GluI GCNGC 3 cut(s) 179, 258, 300
GsuI CTGGAG 1 cut(s) 126
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 10, 244
HpyCH4V TGCA 5 cut(s) 4, 178, 185, 215, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 332
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 6, 51, 66, 129, 156, 201, 237
Lsp1109I GCAGC 2 cut(s) 190, 269
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 16
MbiI CCGCTC 1 cut(s) 302
MboII GAAGA 6 cut(s) 96, 122, 128, 131, 284, 326
MluCI AATT 3 cut(s) 57, 136, 191
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 80, 165, 223, 274, 316
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 257, 332
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 114
PkrI GCNGC 3 cut(s) 180, 259, 301
PpuMI RGGWCCY 2 cut(s) 23, 152
Psp5II RGGWCCY 2 cut(s) 23, 152
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 2 cut(s) 23, 152
PspPPI RGGWCCY 2 cut(s) 23, 152
PstI CTGCAG 1 cut(s) 217
RsaI GTAC 2 cut(s) 12, 129
RsaNI GTAC 2 cut(s) 11, 128
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 179, 258, 300
Sau96I GGNCC 2 cut(s) 23, 152
ScrFI CCNGG 1 cut(s) 144
SetI ASST 9 cut(s) 28, 126, 148, 154, 183, 220, 253, 262, 294
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 23, 152
Sse9I AATT 3 cut(s) 57, 136, 191
SsiI CCGC 2 cut(s) 30, 300
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 10, 244
TasI AATT 3 cut(s) 57, 136, 191
TatI WGTACW 1 cut(s) 10
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 178, 257
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 4 cut(s) 129, 204, 285, 327
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 23, 152
XapI RAATTY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.