Rmu_sc0011329.1_g000001

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011329.1
OG0001312
Physical Location & Seq
Forward (+)
1 .. 2969
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011329.1_g000001.1.cds

Sequence Viewer

Length: 1181 bp
gtgaatttgatgattatttggatatttgctctcaacgccattctgaccctgcagaagggataagtcttacatatagtaatgttaaaacttcagctgaactggagccaaatggatccatacccatagataagcaacaaaagctactggatatagagaatttgactgtgaaaacaccaagtaacactacactggtcagggatttgtcattggtaatcaacaacaacgagaatctattggtgaccggacctagcgggagtggtaagacttctttgttaagaactttggctggtctttggagtgctggaaaaggaaaaattacattctatgtagaagatgaagaagaacttctaccatccaattctccaggtgtagttcctctcgatactgctaatgataaattggtgaccggacctagcgggagtggtaagacttctttgttaagaactttggctggtctttggagtgctggaaaaggaaaaatcacattctatgtagaagatgaagaagaacttctaccatccaattctccaggtgtagttcctctcgatactgctaatgataaatctggggaacttgaaagaccctcaaataggaattataagggcatatttttccttcctcaaagaccgtatatggttctgggaacacttcgtcagcaattgctgtatcccacatgggctaatgatgaggcttccacattagacactactaaaccaactggttctctgcctttcttgatgcaggccccaaactcacagcataagagtgcaaagcctaaacccacaacggaggatatgatacaggttttggaggatgtccggcttggctatatattatcccgattcagtaatttggattgtacttatgaatggtctagtgtcctctcccttggagagcagcaacgccttgcttttgcacgactgttgctttcgaaaccaaaggtggttcttttagatgaatctaccagtgctttagatgaagccaacgaggctcatctatacaagcagatagaaaaagcaggcatcacctatattagcattggccaccggcgaactctatatcagtaccacaacaagaacttgcgtatatccacagtcgatccgaccaacgcccaacagaattggctcattgaacccatcaatcaagacaatttgtataatctctcaaatctacagttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

392

Amino Acids

43.46

Weight (kDa)

5.1

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AciI CCGC 2 cut(s) 251, 416
AclWI GGATC 3 cut(s) 107, 120, 1093
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 2 cut(s) 4, 156
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 2 cut(s) 861, 1066
AfiI CCNNNNNNNGG 2 cut(s) 55, 590
AgsI TTSAA 2 cut(s) 577, 1132
AjnI CCWGG 2 cut(s) 363, 528
AluBI AGCT 2 cut(s) 94, 141
AluI AGCT 2 cut(s) 94, 141
AlwI GGATC 3 cut(s) 107, 120, 1093
AoxI GGCC 2 cut(s) 743, 1041
ApeKI GCWGC 1 cut(s) 897
ApoI RAATTY 2 cut(s) 4, 156
Asp700I GAANNNNTTC 2 cut(s) 344, 509
AspS9I GGNCC 3 cut(s) 244, 409, 744
AsuHPI GGTGA 3 cut(s) 249, 414, 1017
AsuII TTCGAA 1 cut(s) 931
AvaII GGWCC 2 cut(s) 244, 409
BalI TGGCCA 1 cut(s) 1043
BamHI GGATCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 4 cut(s) 332, 364, 497, 529
BbvI GCAGC 1 cut(s) 909
BccI CCATC 3 cut(s) 360, 525, 1144
BciT130I CCWGG 2 cut(s) 365, 530
BciVI GTATCC 1 cut(s) 677
BfaI CTAG 3 cut(s) 248, 413, 875
BfmI CTRYAG 2 cut(s) 50, 1171
BfuI GTATCC 1 cut(s) 677
BglI GCCNNNNNGGC 1 cut(s) 988
BisI GCNGC 1 cut(s) 898
BlsI GCNGC 1 cut(s) 899
Bme1390I CCNGG 2 cut(s) 365, 530
Bme18I GGWCC 2 cut(s) 244, 409
BmgT120I GGNCC 3 cut(s) 244, 409, 744
BmiI GGNNCC 3 cut(s) 104, 114, 746
BmrFI CCNGG 2 cut(s) 365, 530
BmsI GCATC 2 cut(s) 728, 1031
BpmI CTGGAG 3 cut(s) 121, 347, 512
Bpu14I TTCGAA 1 cut(s) 931
BsaJI CCNNGG 1 cut(s) 888
BsaWI WCCGGW 2 cut(s) 241, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 590
Bse118I RCCGGY 1 cut(s) 1046
Bse1I ACTGG 5 cut(s) 104, 149, 194, 723, 965
BseBI CCWGG 2 cut(s) 365, 530
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 3 cut(s) 352, 517, 819
BseLI CCNNNNNNNGG 2 cut(s) 55, 590
BseNI ACTGG 5 cut(s) 104, 149, 194, 723, 965
BseXI GCAGC 1 cut(s) 909
BshFI GGCC 2 cut(s) 745, 1043
BsiSI CCGG 4 cut(s) 242, 407, 819, 1047
BslI CCNNNNNNNGG 2 cut(s) 55, 590
BsnI GGCC 2 cut(s) 745, 1043
Bsp119I TTCGAA 1 cut(s) 931
Bsp143I GATC 2 cut(s) 112, 1098
BspACI CCGC 2 cut(s) 251, 416
BspANI GGCC 2 cut(s) 745, 1043
BspLI GGNNCC 3 cut(s) 104, 114, 746
BspMAI CTGCAG 1 cut(s) 54
BspPI GGATC 3 cut(s) 107, 120, 1093
BspT104I TTCGAA 1 cut(s) 931
BsrFI RCCGGY 1 cut(s) 1046
BsrI ACTGG 5 cut(s) 104, 149, 194, 723, 965
BssAI RCCGGY 1 cut(s) 1046
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 2 cut(s) 112, 1098
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 2 cut(s) 365, 530
Bst4CI ACNGT 5 cut(s) 165, 629, 923, 1095, 1175
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 2 cut(s) 743, 1020
BstEII GGTNACC 2 cut(s) 237, 402
BstENI CCTNNNNNAGG 2 cut(s) 53, 588
BstF5I GGATG 3 cut(s) 352, 517, 819
BstKTI GATC 2 cut(s) 115, 1101
BstMBI GATC 2 cut(s) 112, 1098
BstMWI GCNNNNNNNGC 3 cut(s) 35, 138, 988
BstNI CCWGG 2 cut(s) 365, 530
BstPI GGTNACC 2 cut(s) 237, 402
BstSCI CCNGG 2 cut(s) 363, 528
BstSFI CTRYAG 2 cut(s) 50, 1171
BstV1I GCAGC 1 cut(s) 909
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 745, 1043
BtsCI GGATG 3 cut(s) 352, 517, 819
BtsIMutI CAGTG 2 cut(s) 187, 972
Cac8I GCNNGC 2 cut(s) 743, 1020
Cfr10I RCCGGY 1 cut(s) 1046
Cfr13I GGNCC 3 cut(s) 244, 409, 744
Csp6I GTAC 2 cut(s) 860, 1065
CviAII CATG 1 cut(s) 674
CviQI GTAC 2 cut(s) 860, 1065
DpnI GATC 2 cut(s) 114, 1100
DpnII GATC 2 cut(s) 112, 1098
EaeI YGGCCR 1 cut(s) 1041
Eco130I CCWWGG 1 cut(s) 888
Eco47I GGWCC 2 cut(s) 244, 409
Eco57I CTGAAG 1 cut(s) 74
Eco91I GGTNACC 2 cut(s) 237, 402
EcoNI CCTNNNNNAGG 2 cut(s) 53, 588
EcoO109I RGGNCCY 1 cut(s) 744
EcoO65I GGTNACC 2 cut(s) 237, 402
EcoRII CCWGG 2 cut(s) 363, 528
EcoT14I CCWWGG 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 1 cut(s) 677
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 494, 526
FatI CATG 1 cut(s) 673
FauI CCCGC 2 cut(s) 244, 409
Fnu4HI GCNGC 1 cut(s) 898
FokI GGATG 3 cut(s) 339, 504, 826
Fsp4HI GCNGC 1 cut(s) 898
FspBI CTAG 3 cut(s) 248, 413, 875
GluI GCNGC 1 cut(s) 898
GsuI CTGGAG 3 cut(s) 121, 347, 512
HaeIII GGCC 2 cut(s) 745, 1043
HapII CCGG 4 cut(s) 242, 407, 819, 1047
Hin1II CATG 1 cut(s) 677
HinfI GANTC 3 cut(s) 228, 842, 958
HpaII CCGG 4 cut(s) 242, 407, 819, 1047
HphI GGTGA 3 cut(s) 249, 414, 1017
Hpy188I TCNGA 2 cut(s) 45, 1103
Hpy188III TCNNGA 5 cut(s) 379, 544, 735, 839, 1144
HpyAV CCTTC 2 cut(s) 49, 625
HpyCH4III ACNGT 5 cut(s) 165, 629, 923, 1095, 1175
HpyCH4V TGCA 4 cut(s) 52, 741, 769, 916
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 138, 988
Hsp92II CATG 1 cut(s) 677
Kzo9I GATC 2 cut(s) 112, 1098
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 909
LweI GCATC 2 cut(s) 728, 1031
MaeI CTAG 3 cut(s) 248, 413, 875
MaeIII GTNAC 3 cut(s) 178, 237, 402
MalI GATC 2 cut(s) 114, 1100
MboI GATC 2 cut(s) 112, 1098
MboII GAAGA 6 cut(s) 343, 349, 352, 508, 514, 517
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 1043
MluNI TGGCCA 1 cut(s) 1043
MmeI TCCRAC 1 cut(s) 1126
MnlI CCTC 9 cut(s) 386, 551, 594, 629, 681, 783, 804, 892, 981
Mox20I TGGCCA 1 cut(s) 1043
MroXI GAANNNNTTC 2 cut(s) 344, 509
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 3 cut(s) 83, 274, 439
MslI CAYNNNNRTG 1 cut(s) 764
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 4 cut(s) 242, 407, 819, 1047
MspR9I CCNGG 2 cut(s) 365, 530
MunI CAATTG 1 cut(s) 658
MvaI CCWGG 2 cut(s) 365, 530
MwoI GCNNNNNNNGC 3 cut(s) 35, 138, 988
NdeII GATC 2 cut(s) 112, 1098
NlaIII CATG 1 cut(s) 677
NlaIV GGNNCC 3 cut(s) 104, 114, 746
NmuCI GTSAC 2 cut(s) 237, 402
NspV TTCGAA 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 344, 509
PfeI GAWTC 3 cut(s) 228, 842, 958
PkrI GCNGC 1 cut(s) 899
PsiI TTATAA 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 363, 528
PspEI GGTNACC 2 cut(s) 237, 402
PspGI CCWGG 2 cut(s) 363, 528
PspN4I GGNNCC 3 cut(s) 104, 114, 746
PspPI GGNCC 3 cut(s) 244, 409, 744
PstI CTGCAG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 861, 1066
RsaNI GTAC 2 cut(s) 860, 1065
RseI CAYNNNNRTG 1 cut(s) 764
SaqAI TTAA 3 cut(s) 83, 274, 439
SatI GCNGC 1 cut(s) 898
Sau3AI GATC 2 cut(s) 112, 1098
Sau96I GGNCC 3 cut(s) 244, 409, 744
ScrFI CCNGG 2 cut(s) 365, 530
SetI ASST 9 cut(s) 96, 143, 249, 369, 414, 534, 806, 944, 1030
SfaNI GCATC 2 cut(s) 728, 1031
SfcI CTRYAG 2 cut(s) 50, 1171
SfuI TTCGAA 1 cut(s) 931
SgrAI CRCCGGYG 1 cut(s) 1046
SinI GGWCC 2 cut(s) 244, 409
SmiMI CAYNNNNRTG 1 cut(s) 764
SsiI CCGC 2 cut(s) 251, 416
SspMI CTAG 3 cut(s) 248, 413, 875
StyD4I CCNGG 2 cut(s) 363, 528
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 5 cut(s) 165, 629, 923, 1095, 1175
TaqI TCGA 4 cut(s) 380, 545, 931, 1097
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 3 cut(s) 228, 842, 958
Tru1I TTAA 3 cut(s) 83, 274, 439
Tru9I TTAA 3 cut(s) 83, 274, 439
TscAI CASTG 2 cut(s) 194, 972
TseFI GTSAC 2 cut(s) 237, 402
TseI GCWGC 1 cut(s) 897
Tsp45I GTSAC 2 cut(s) 237, 402
TspDTI ATGAA 5 cut(s) 350, 515, 881, 971, 992
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 2 cut(s) 194, 972
VpaK11BI GGWCC 2 cut(s) 244, 409
XagI CCTNNNNNAGG 2 cut(s) 53, 588
XapI RAATTY 2 cut(s) 4, 156
XmnI GAANNNNTTC 2 cut(s) 344, 509
XspI CTAG 3 cut(s) 248, 413, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.