Rw5G014390

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001312
Physical Location & Seq
Reverse (-)
17272351 .. 17277704
5354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G014390.1

Sequence Viewer

Length: 2247 bp
ATGATAATACAGGCTCAAAGTCACTGTGTCTCACTCTGCTTGGCTCATGGCTACTCCACCCACCACTCCCATCGTCACTTTACACTAGTAGTGGCACCACCCAGGTTTCCATCACTGCCCACAATGCCCACCACCACTCGCAACCGAAACTCCGTTAGAAGAAGAAGAAACGACGCCGCTTCATGGCGTCGTTCTGCCGCGGCGTCCGACTCTGTACCACCGCCACCACCTGCTCCTCCAACCCCGGAAAAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGGTGGCGGCGCCGTACTGGTCCTCCGACGACAAAGTGCAGGCCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAGTTTTCTGGGCCGGGACTTCTACAATGCTCTTGCCAATAAGGACCAGGAGCAATTCACGAAGCAATTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGATTTTTGTGTTGCGGGATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGACGCGTTATTACATTGACCGTTACCTGAGCAACCAAACATTTTACAGAATTCAATCCCAATCAATCATTGATAATCCAGATCAGCGAATTGTTGATGATCTAAGTTCTTTCACGGGGACAGCCCTGTCATTCTCTTTAACACTCTTCAATGCTGTGATAGATCTCATATCATTCAGTAACATCTTATTTGGTATCTATCCTCCGCTGTTTGTTGTTCTTCTAGTATATTCGATTGGTGGAACAGTGATCAGTGTCTTTATTGGAAGGGGTTTGGTGACATTAAACTTCCTGCAAGAGAAAAAGGAAGCAGATTTTCGTTATGGACTTGTGCGCGTTCGAGAAAATGCTGAATCAATAGCTTTCTATAGTGGTGAAGACAATGAAATGCAACTTTTGCTGCAACGCTTCAAAAGTGCTTTTGAGAATCTAACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCAGTGGATACCGCTATCTTATTCAAATTCTTCCTGCTGCTGTCGTTGCTCCTATGTACTTCTCTGGGAAAATTGAGTTTGGTGTCATTAATCAGTCAGTATCTGCTTTTAATCATATCCTGGGGGACTTCTCCCTTATCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGGTGAATTTGATGATTATTTGGATATTTGCTCTGAACGCCATTCTGACCCTGCAGAAGGGATAAGTCTTACATATAGTAATGTTAAAACTTTAGCTGAACTGGAGCCAAATGGATCCATACCCATAGATAAGCAACAAAAGCTACTGGATATAGAGAATTTGACTGTGAAAACACCAAGTAACACTACACTGGTCAGGGATTTGTCATTGGTAATCAACAACAACGAGAATCTATTGGTGACCGGACCTAGCGGGAGTGGTAAGACTTCTTTGTTAAGAACTTTGGCTGGTCTTTGGAGTGCTGGAAAAGGAAAAATCACATTCTATGTGGAAGATGAAGAAGAGCTTCTACCATCCAATTCTCCAGGTGTAGTTCCTCTCGATACTGCTAATGATAAATCTGGGGAACTTGAAAGACCCTCAAATAGGAATTATAAGGGCATATTTTTCCTTCCTCAAAGACCGTATATGGTTCTGGGAACACTTCGTCAGCAATTGCTGTATCCTACATGGGCTAATGATGAGGCTTCCACATTAGACACTACTAAACCAACTGGTTCTCTGCCTTTCTTGATGCAGGCCCCAAACTCACAGCATAAGAGTGCAAAGCCTAAACCCACAACGGAGGATATGATACAGGTTTTGGAGGATGTCCGGCTTGGCTATATATTATCCCGATTCAGTAATTTGGATTGTACTTATGAATGGTCTAGTGTCCTCTCCCTTGGAGAGCAGCAACGCCTTGCTTTTGCACGACTGTTGCTTTCGAAACCAAAGTTGGTTCTTTTAGATGAATCTACCAGTGCTTTAGACGAAGCCAACGAGGCTCATCTATACAAGCAGATAGAAAAAGCAGGCATCACCTATATTAGCATTGGCCACCGGCGAACTCTATATCAGTACCACAACAAGAACTTGCGTATATCCACAGTCGATCCGACCAACGCCCAACAGAATTGGCTCATTGAACCCATCAATCAAGACAATTTGTATAATCTCTCAAATCTACAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

748

Amino Acids

84.33

Weight (kDa)

6.89

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 112 - 367 1.8e-51 ABC transporter transmembrane region 2
ABC_membrane PF00664 121 - 387 2e-07 ABC transporter transmembrane region
SbmA_BacA PF05992 150 - 415 2.9e-19 SbmA/BacA-like family
ABC_tran PF00005 476 - 678 2.4e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1665
AarI CACCTGC 1 cut(s) 238
AasI GACNNNNNNGTC 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 3 cut(s) 94, 307, 488
AccII CGCG 3 cut(s) 200, 574, 903
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 9 cut(s) 177, 198, 200, 221, 305, 523, 773, 1051, 1482
AclWI GGATC 4 cut(s) 398, 1338, 1351, 2159
AcoI YGGCCR 1 cut(s) 2107
AcsI RAATTY 5 cut(s) 504, 618, 1065, 1235, 1387
AcuI CTGAAG 1 cut(s) 388
AcyI GRCGYC 4 cut(s) 174, 187, 203, 308
AfaI GTAC 6 cut(s) 216, 314, 1097, 1184, 1927, 2132
AfiI CCNNNNNNNGG 4 cut(s) 183, 387, 1286, 1656
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 7 cut(s) 623, 718, 979, 1020, 1064, 1643, 2198
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 6 cut(s) 101, 341, 450, 483, 1158, 1594
AjuI GAANNNNNNNTTGG 2 cut(s) 1991, 2023
AluBI AGCT 6 cut(s) 352, 929, 1016, 1325, 1372, 1576
AluI AGCT 6 cut(s) 352, 929, 1016, 1325, 1372, 1576
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 4 cut(s) 398, 1338, 1351, 2159
AlwNI CAGNNNCTG 2 cut(s) 280, 1142
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 339, 415, 1809, 2107
ApeKI GCWGC 5 cut(s) 280, 349, 967, 1076, 1963
ApoI RAATTY 5 cut(s) 504, 618, 1065, 1235, 1387
AseI ATTAAT 1 cut(s) 1128
Asp700I GAANNNNTTC 1 cut(s) 1575
AspLEI GCGC 3 cut(s) 310, 903, 1205
AspS9I GGNCC 5 cut(s) 318, 415, 448, 1475, 1810
AsuC2I CCSGG 3 cut(s) 245, 388, 419
AsuHPI GGTGA 6 cut(s) 856, 953, 1030, 1244, 1480, 2083
AsuII TTCGAA 1 cut(s) 1997
AvaII GGWCC 3 cut(s) 318, 448, 1475
BalI TGGCCA 1 cut(s) 2109
BamHI GGATCC 1 cut(s) 1343
BanI GGYRCC 3 cut(s) 94, 307, 488
BarI GAAGNNNNNNTAC 2 cut(s) 1563, 1595
BbsI GAAGAC 2 cut(s) 355, 951
BbvI GCAGC 5 cut(s) 267, 361, 954, 1063, 1975
BccI CCATC 4 cut(s) 78, 118, 1591, 2210
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 6 cut(s) 103, 343, 452, 485, 1160, 1596
BciVI GTATCC 2 cut(s) 1040, 1743
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 3 cut(s) 245, 388, 419
BcoDI GTCTC 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 4 cut(s) 86, 791, 1479, 1941
BfmI CTRYAG 3 cut(s) 934, 1281, 2237
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 2 cut(s) 1040, 1743
BglI GCCNNNNNGGC 1 cut(s) 2054
BglII AGATCT 2 cut(s) 560, 730
BisI GCNGC 9 cut(s) 177, 198, 201, 281, 306, 350, 968, 1077, 1964
BlsI GCNGC 9 cut(s) 178, 199, 202, 282, 307, 351, 969, 1078, 1965
Bme1390I CCNGG 9 cut(s) 103, 245, 343, 388, 419, 452, 485, 1160, 1596
Bme18I GGWCC 3 cut(s) 318, 448, 1475
BmgT120I GGNCC 5 cut(s) 318, 415, 448, 1475, 1810
BmiI GGNNCC 6 cut(s) 96, 309, 490, 1335, 1345, 1812
BmrFI CCNGG 9 cut(s) 103, 245, 343, 388, 419, 452, 485, 1160, 1596
BmsI GCATC 3 cut(s) 336, 1794, 2097
BpiI GAAGAC 2 cut(s) 355, 951
BpmI CTGGAG 2 cut(s) 1352, 1578
Bpu10I CCTNAGC 1 cut(s) 596
Bpu14I TTCGAA 1 cut(s) 1997
BpuEI CTTGAG 1 cut(s) 1049
BpuMI CCSGG 3 cut(s) 245, 388, 419
BsaHI GRCGYC 4 cut(s) 174, 187, 203, 308
BsaJI CCNNGG 6 cut(s) 101, 198, 243, 484, 1159, 1954
BsaWI WCCGGW 2 cut(s) 285, 1472
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 305, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 387, 1286, 1656
Bse118I RCCGGY 1 cut(s) 2112
Bse1I ACTGG 7 cut(s) 320, 1041, 1335, 1380, 1425, 1789, 2031
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 6 cut(s) 103, 343, 452, 485, 1160, 1596
BseDI CCNNGG 6 cut(s) 101, 198, 243, 484, 1159, 1954
BseGI GGATG 4 cut(s) 351, 573, 1583, 1885
BseLI CCNNNNNNNGG 4 cut(s) 183, 387, 1286, 1656
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 7 cut(s) 320, 1041, 1335, 1380, 1425, 1789, 2031
BseRI GAGGAG 2 cut(s) 225, 372
BseXI GCAGC 5 cut(s) 267, 361, 954, 1063, 1975
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 3 cut(s) 200, 574, 903
BshFI GGCC 4 cut(s) 341, 417, 1811, 2109
BshNI GGYRCC 3 cut(s) 94, 307, 488
BsiSI CCGG 7 cut(s) 245, 286, 387, 418, 1473, 1885, 2113
BslFI GGGAC 3 cut(s) 434, 700, 1178
BslI CCNNNNNNNGG 4 cut(s) 183, 387, 1286, 1656
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 3 cut(s) 434, 700, 1178
BsnI GGCC 4 cut(s) 341, 417, 1811, 2109
Bsp119I TTCGAA 1 cut(s) 1997
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
BspACI CCGC 9 cut(s) 177, 198, 200, 221, 305, 523, 773, 1051, 1482
BspANI GGCC 4 cut(s) 341, 417, 1811, 2109
BspCNI CTCAG 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 3 cut(s) 200, 574, 903
BspLI GGNNCC 6 cut(s) 96, 309, 490, 1335, 1345, 1812
BspMAI CTGCAG 1 cut(s) 1285
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 4 cut(s) 398, 1338, 1351, 2159
BspQI GCTCTTC 1 cut(s) 1566
BspT104I TTCGAA 1 cut(s) 1997
BspT107I GGYRCC 3 cut(s) 94, 307, 488
BsrFI RCCGGY 1 cut(s) 2112
BsrI ACTGG 7 cut(s) 320, 1041, 1335, 1380, 1425, 1789, 2031
BssAI RCCGGY 1 cut(s) 2112
BssECI CCNNGG 6 cut(s) 101, 198, 243, 484, 1159, 1954
BssMI GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
BssNI GRCGYC 4 cut(s) 174, 187, 203, 308
BssT1I CCWWGG 1 cut(s) 1954
Bst2UI CCWGG 6 cut(s) 103, 343, 452, 485, 1160, 1596
Bst4CI ACNGT 8 cut(s) 26, 590, 814, 1396, 1695, 1989, 2161, 2241
Bst6I CTCTTC 2 cut(s) 719, 1566
BstACI GRCGYC 4 cut(s) 174, 187, 203, 308
BstAPI GCANNNNNTGC 2 cut(s) 280, 964
BstBI TTCGAA 1 cut(s) 1997
BstC8I GCNNGC 3 cut(s) 339, 1809, 2086
BstDEI CTNAG 2 cut(s) 596, 671
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 1468
BstENI CCTNNNNNAGG 2 cut(s) 1284, 1654
BstF5I GGATG 4 cut(s) 351, 573, 1583, 1885
BstFNI CGCG 3 cut(s) 200, 574, 903
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 3 cut(s) 310, 903, 1205
BstKTI GATC 9 cut(s) 393, 563, 652, 670, 733, 819, 1225, 1346, 2167
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
BstMWI GCNNNNNNNGC 8 cut(s) 124, 280, 964, 1085, 1211, 1266, 1369, 2054
BstNI CCWGG 6 cut(s) 103, 343, 452, 485, 1160, 1596
BstPI GGTNACC 1 cut(s) 1468
BstSCI CCNGG 9 cut(s) 101, 243, 341, 386, 417, 450, 483, 1158, 1594
BstSFI CTRYAG 3 cut(s) 934, 1281, 2237
BstUI CGCG 3 cut(s) 200, 574, 903
BstV1I GCAGC 5 cut(s) 267, 361, 954, 1063, 1975
BstV2I GAAGAC 2 cut(s) 355, 951
BstX2I RGATCY 3 cut(s) 560, 730, 1343
BstYI RGATCY 3 cut(s) 560, 730, 1343
BsuI GTATCC 2 cut(s) 1040, 1743
BsuRI GGCC 4 cut(s) 341, 417, 1811, 2109
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 351, 573, 1583, 1885
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 7 cut(s) 22, 113, 819, 826, 1048, 1418, 2038
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 339, 1809, 2086
CaiI CAGNNNCTG 2 cut(s) 280, 1142
CfoI GCGC 3 cut(s) 310, 903, 1205
Cfr10I RCCGGY 1 cut(s) 2112
Cfr13I GGNCC 5 cut(s) 318, 415, 448, 1475, 1810
Cfr42I CCGCGG 1 cut(s) 201
CseI GACGC 6 cut(s) 176, 182, 192, 286, 385, 580
Csp6I GTAC 6 cut(s) 215, 313, 1096, 1183, 1926, 2131
CviAII CATG 3 cut(s) 47, 183, 1740
CviQI GTAC 6 cut(s) 215, 313, 1096, 1183, 1926, 2131
DdeI CTNAG 2 cut(s) 596, 671
DinI GGCGCC 1 cut(s) 309
DpnI GATC 9 cut(s) 392, 562, 651, 669, 732, 818, 1224, 1345, 2166
DpnII GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
DrdI GACNNNNNNGTC 1 cut(s) 694
DseDI GACNNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 2107
Eam1104I CTCTTC 2 cut(s) 719, 1566
EarI CTCTTC 2 cut(s) 719, 1566
Eco130I CCWWGG 1 cut(s) 1954
Eco47I GGWCC 3 cut(s) 318, 448, 1475
Eco57I CTGAAG 1 cut(s) 388
Eco91I GGTNACC 1 cut(s) 1468
EcoNI CCTNNNNNAGG 2 cut(s) 1284, 1654
EcoO109I RGGNCCY 1 cut(s) 1810
EcoO65I GGTNACC 1 cut(s) 1468
EcoRI GAATTC 2 cut(s) 504, 618
EcoRII CCWGG 6 cut(s) 101, 341, 450, 483, 1158, 1594
EcoT14I CCWWGG 1 cut(s) 1954
EgeI GGCGCC 1 cut(s) 309
EheI GGCGCC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 1954
FaeI CATG 3 cut(s) 50, 186, 1743
FalI AAGNNNNNCTT 2 cut(s) 1560, 1592
FaqI GGGAC 3 cut(s) 434, 700, 1178
FatI CATG 3 cut(s) 46, 182, 1739
FauI CCCGC 2 cut(s) 516, 1475
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 9 cut(s) 177, 198, 201, 281, 306, 350, 968, 1077, 1964
FokI GGATG 4 cut(s) 358, 580, 1570, 1892
Fsp4HI GCNGC 9 cut(s) 177, 198, 201, 281, 306, 350, 968, 1077, 1964
FspBI CTAG 4 cut(s) 86, 791, 1479, 1941
GlaI GCGC 3 cut(s) 309, 902, 1204
GluI GCNGC 9 cut(s) 177, 198, 201, 281, 306, 350, 968, 1077, 1964
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 1352, 1578
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 4 cut(s) 341, 417, 1811, 2109
HapII CCGG 7 cut(s) 245, 286, 387, 418, 1473, 1885, 2113
HgaI GACGC 6 cut(s) 176, 182, 192, 286, 385, 580
HhaI GCGC 3 cut(s) 310, 903, 1205
Hin1I GRCGYC 4 cut(s) 174, 187, 203, 308
Hin1II CATG 3 cut(s) 50, 186, 1743
Hin6I GCGC 3 cut(s) 308, 901, 1203
HinP1I GCGC 3 cut(s) 308, 901, 1203
HinfI GANTC 8 cut(s) 209, 291, 360, 920, 994, 1459, 1908, 2024
HpaII CCGG 7 cut(s) 245, 286, 387, 418, 1473, 1885, 2113
HphI GGTGA 6 cut(s) 856, 953, 1030, 1244, 1480, 2083
Hpy166II GTNNAC 1 cut(s) 1183
Hpy188I TCNGA 7 cut(s) 208, 268, 325, 510, 1264, 1276, 2169
Hpy8I GTNNAC 1 cut(s) 1183
Hpy99I CGWCG 4 cut(s) 176, 192, 329, 401
HpyAV CCTTC 5 cut(s) 292, 377, 828, 1280, 1691
HpyCH4III ACNGT 8 cut(s) 26, 590, 814, 1396, 1695, 1989, 2161, 2241
HpyF10VI GCNNNNNNNGC 8 cut(s) 124, 280, 964, 1085, 1211, 1266, 1369, 2054
HpyF3I CTNAG 2 cut(s) 596, 671
Hsp92I GRCGYC 4 cut(s) 174, 187, 203, 308
Hsp92II CATG 3 cut(s) 50, 186, 1743
HspAI GCGC 3 cut(s) 308, 901, 1203
KasI GGCGCC 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 816
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
LguI GCTCTTC 1 cut(s) 1566
LmnI GCTCC 5 cut(s) 238, 288, 454, 1093, 1333
Lsp1109I GCAGC 5 cut(s) 267, 361, 954, 1063, 1975
LweI GCATC 3 cut(s) 336, 1794, 2097
MaeI CTAG 4 cut(s) 86, 791, 1479, 1941
MaeIII GTNAC 7 cut(s) 20, 74, 590, 746, 844, 1409, 1468
MalI GATC 9 cut(s) 392, 562, 651, 669, 732, 818, 1224, 1345, 2166
MboI GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
MfeI CAATTG 3 cut(s) 470, 1004, 1724
MflI RGATCY 3 cut(s) 560, 730, 1343
MlsI TGGCCA 1 cut(s) 2109
MluI ACGCGT 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 2109
Mly113I GGCGCC 1 cut(s) 308
MlyI GAGTC 2 cut(s) 203, 369
MmeI TCCRAC 4 cut(s) 231, 263, 348, 2192
Mox20I TGGCCA 1 cut(s) 2109
MroI TCCGGA 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 1575
MscI TGGCCA 1 cut(s) 2109
MseI TTAA 6 cut(s) 707, 851, 1128, 1149, 1314, 1505
MslI CAYNNNNRTG 1 cut(s) 1830
Msp20I TGGCCA 1 cut(s) 2109
MspA1I CMGCKG 3 cut(s) 200, 352, 775
MspI CCGG 7 cut(s) 245, 286, 387, 418, 1473, 1885, 2113
MspR9I CCNGG 9 cut(s) 103, 245, 343, 388, 419, 452, 485, 1160, 1596
MunI CAATTG 3 cut(s) 470, 1004, 1724
MvaI CCWGG 6 cut(s) 103, 343, 452, 485, 1160, 1596
MvnI CGCG 3 cut(s) 200, 574, 903
MwoI GCNNNNNNNGC 8 cut(s) 124, 280, 964, 1085, 1211, 1266, 1369, 2054
NarI GGCGCC 1 cut(s) 308
NciI CCSGG 3 cut(s) 245, 388, 419
NdeII GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
NlaIII CATG 3 cut(s) 50, 186, 1743
NlaIV GGNNCC 6 cut(s) 96, 309, 490, 1335, 1345, 1812
NmuCI GTSAC 4 cut(s) 20, 74, 844, 1468
NspV TTCGAA 1 cut(s) 1997
PaqCI CACCTGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 1566
PcsI WCGNNNNNNNCGW 1 cut(s) 2049
PdmI GAANNNNTTC 1 cut(s) 1575
PfeI GAWTC 6 cut(s) 291, 920, 994, 1459, 1908, 2024
PkrI GCNGC 9 cut(s) 178, 199, 202, 282, 307, 351, 969, 1078, 1965
PleI GAGTC 2 cut(s) 203, 368
PluTI GGCGCC 1 cut(s) 311
PpsI GAGTC 2 cut(s) 203, 368
PshBI ATTAAT 1 cut(s) 1128
PsiI TTATAA 1 cut(s) 1665
Psp6I CCWGG 6 cut(s) 101, 341, 450, 483, 1158, 1594
PspEI GGTNACC 1 cut(s) 1468
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 6 cut(s) 101, 341, 450, 483, 1158, 1594
PspN4I GGNNCC 6 cut(s) 96, 309, 490, 1335, 1345, 1812
PspPI GGNCC 5 cut(s) 318, 415, 448, 1475, 1810
PstI CTGCAG 1 cut(s) 1285
PstNI CAGNNNCTG 2 cut(s) 280, 1142
PsuI RGATCY 3 cut(s) 560, 730, 1343
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 6 cut(s) 216, 314, 1097, 1184, 1927, 2132
RsaNI GTAC 6 cut(s) 215, 313, 1096, 1183, 1926, 2131
RseI CAYNNNNRTG 1 cut(s) 1830
SacII CCGCGG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 1566
SaqAI TTAA 6 cut(s) 707, 851, 1128, 1149, 1314, 1505
SatI GCNGC 9 cut(s) 177, 198, 201, 281, 306, 350, 968, 1077, 1964
Sau3AI GATC 9 cut(s) 390, 560, 649, 667, 730, 816, 1222, 1343, 2164
Sau96I GGNCC 5 cut(s) 318, 415, 448, 1475, 1810
SchI GAGTC 2 cut(s) 203, 369
ScrFI CCNGG 9 cut(s) 103, 245, 343, 388, 419, 452, 485, 1160, 1596
SfaNI GCATC 3 cut(s) 336, 1794, 2097
SfcI CTRYAG 3 cut(s) 934, 1281, 2237
SfoI GGCGCC 1 cut(s) 309
Sfr303I CCGCGG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 1997
SgrAI CRCCGGYG 1 cut(s) 2112
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 3 cut(s) 318, 448, 1475
SmiMI CAYNNNNRTG 1 cut(s) 1830
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
SpeI ACTAGT 1 cut(s) 85
SsiI CCGC 9 cut(s) 177, 198, 200, 221, 305, 523, 773, 1051, 1482
SspDI GGCGCC 1 cut(s) 307
SspMI CTAG 4 cut(s) 86, 791, 1479, 1941
StyD4I CCNGG 9 cut(s) 101, 243, 341, 386, 417, 450, 483, 1158, 1594
StyI CCWWGG 1 cut(s) 1954
TaaI ACNGT 8 cut(s) 26, 590, 814, 1396, 1695, 1989, 2161, 2241
TaqI TCGA 6 cut(s) 800, 907, 1225, 1611, 1997, 2163
TatI WGTACW 2 cut(s) 1095, 1925
TauI GCSGC 4 cut(s) 179, 200, 203, 308
TfiI GAWTC 6 cut(s) 291, 920, 994, 1459, 1908, 2024
Tru1I TTAA 6 cut(s) 707, 851, 1128, 1149, 1314, 1505
Tru9I TTAA 6 cut(s) 707, 851, 1128, 1149, 1314, 1505
TscAI CASTG 7 cut(s) 29, 120, 819, 826, 1048, 1425, 2038
TseFI GTSAC 4 cut(s) 20, 74, 844, 1468
TseI GCWGC 5 cut(s) 280, 349, 967, 1076, 1963
Tsp45I GTSAC 4 cut(s) 20, 74, 844, 1468
TspDTI ATGAA 5 cut(s) 171, 966, 1581, 1947, 2037
TspGWI ACGGA 2 cut(s) 142, 1868
TspRI CASTG 7 cut(s) 29, 120, 819, 826, 1048, 1425, 2038
VpaK11BI GGWCC 3 cut(s) 318, 448, 1475
VspI ATTAAT 1 cut(s) 1128
XagI CCTNNNNNAGG 2 cut(s) 1284, 1654
XapI RAATTY 5 cut(s) 504, 618, 1065, 1235, 1387
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 1575
XspI CTAG 4 cut(s) 86, 791, 1479, 1941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.