RchiOBHm_Chr2g0171001

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001312
Physical Location & Seq
Forward (+)
84703928 .. 84707907
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53848

Sequence Viewer

Length: 882 bp
ATGGAAGCAGATTTTCATTATGGACTTGTGCGCATTCGAGAAAATGCTGAATCGATAGCTTTCTATAGTGGTGAAGCCAAAGAAATGCAACATTTGCTTCAATGCTTCAAAAGTGCTTTTGAGAATCTGACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCAGTGGAAATTTTGAGTTTTTCACCAGTGGATACTGCTATCTTATTCAAATTCTTCCTGCTGCTGTCATTGCTCCTATGTACTTCTCTAGAAAAATTGAGCTTGGTGTCATTAATCAGTCAGTATCGGCTTTTAATCATATCCTGGGAGACTTCTCCCTCACCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAACAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGCCCTTCTGACCCTGCAGAAGGGATAAGTTTTACGTATAGTAATGTTAAAACTTTAGCTGAACTGGAGCCAAATGGATCCATACCCATAGATAAGCAACAAAAGCTACTGGACATAGAGAATTTGACTGTGCAAACACCAAGTAGCACTACATTGGTTAGGGATTTATCATTGGTAATCAACAATAATGAGAATCTATTGGTGACAGGACCTAGCGGGAGTGGCAAGACTTATTTGTTAAGAATTTTGGCTGGTCTTTGGAGTGCTGGAAGAGGAGAGATTACATTCTATGTGGAAGATGAAGAAGAGATTGTACCATCCAATTCTCCAGGTGTAGGTCCTCTTGGTACTGCTAATGATAAATATGGGGAACATGAAAGACCCTCAAATAGGAGTTTTAAGGGCATATTTTTCGTTCATGTGAAGCGGAAAGACGAGCAATGTAGCTTGCAGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

293

Amino Acids

32.81

Weight (kDa)

4.8

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 1 - 77 1.3e-11 ABC transporter transmembrane region 2
ABC_tran PF00005 194 - 237 3.1e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 32
AciI CCGC 2 cut(s) 636, 847
AclWI GGATC 2 cut(s) 492, 505
AcsI RAATTY 5 cut(s) 178, 219, 389, 541, 663
AfaI GTAC 4 cut(s) 251, 338, 735, 769
AfiI CCNNNNNNNGG 3 cut(s) 440, 755, 810
AgsI TTSAA 5 cut(s) 101, 109, 150, 218, 366
AjnI CCWGG 2 cut(s) 312, 748
AluBI AGCT 7 cut(s) 59, 146, 271, 414, 479, 526, 867
AluI AGCT 7 cut(s) 59, 146, 271, 414, 479, 526, 867
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 492, 505
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 5 cut(s) 178, 219, 389, 541, 663
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 2 cut(s) 33, 359
AspS9I GGNCC 2 cut(s) 629, 758
AsuHPI GGTGA 5 cut(s) 83, 160, 184, 322, 634
AvaII GGWCC 2 cut(s) 629, 758
BamHI GGATCC 1 cut(s) 497
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 745
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 2 cut(s) 314, 750
BciVI GTATCC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 258, 633
BfmI CTRYAG 2 cut(s) 64, 435
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 314, 750
Bme18I GGWCC 2 cut(s) 629, 758
BmgT120I GGNCC 2 cut(s) 629, 758
BmiI GGNNCC 2 cut(s) 489, 499
BmrFI CCNGG 2 cut(s) 314, 750
BpmI CTGGAG 2 cut(s) 506, 732
BpuEI CTTGAG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 755, 810
Bse1I ACTGG 4 cut(s) 171, 195, 489, 534
Bse3DI GCAATG 2 cut(s) 237, 866
BseBI CCWGG 2 cut(s) 314, 750
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 737
BseLI CCNNNNNNNGG 3 cut(s) 440, 755, 810
BseMI GCAATG 2 cut(s) 237, 866
BseNI ACTGG 4 cut(s) 171, 195, 489, 534
BseRI GAGGAG 1 cut(s) 708
BseXI GCAGC 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 440, 755, 810
BsmAI GTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 376, 497
BspACI CCGC 2 cut(s) 636, 847
BspDI ATCGAT 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 489, 499
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 2 cut(s) 492, 505
BsrDI GCAATG 2 cut(s) 237, 866
BsrI ACTGG 4 cut(s) 171, 195, 489, 534
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 376, 497
Bst2UI CCWGG 2 cut(s) 314, 750
Bst4CI ACNGT 3 cut(s) 334, 370, 550
Bst6I CTCTTC 2 cut(s) 685, 720
BstAPI GCANNNNNTGC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 869
BstENI CCTNNNNNAGG 2 cut(s) 438, 808
BstF5I GGATG 1 cut(s) 737
BstHHI GCGC 2 cut(s) 33, 359
BstKTI GATC 2 cut(s) 379, 500
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 376, 497
BstMWI GCNNNNNNNGC 5 cut(s) 94, 239, 420, 523, 642
BstNI CCWGG 2 cut(s) 314, 750
BstSCI CCNGG 2 cut(s) 312, 748
BstSFI CTRYAG 2 cut(s) 64, 435
BstSNI TACGTA 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu15I ATCGAT 1 cut(s) 53
BsuI GTATCC 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 53
BtsCI GGATG 1 cut(s) 737
BtsIMutI CAGTG 2 cut(s) 178, 202
Cac8I GCNNGC 1 cut(s) 869
CfoI GCGC 2 cut(s) 33, 359
Cfr13I GGNCC 2 cut(s) 629, 758
ClaI ATCGAT 1 cut(s) 53
Csp6I GTAC 4 cut(s) 250, 337, 734, 768
CviAII CATG 2 cut(s) 794, 839
CviQI GTAC 4 cut(s) 250, 337, 734, 768
DpnI GATC 2 cut(s) 378, 499
DpnII GATC 2 cut(s) 376, 497
Eam1104I CTCTTC 2 cut(s) 685, 720
EarI CTCTTC 2 cut(s) 685, 720
Eco105I TACGTA 1 cut(s) 456
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 629, 758
EcoNI CCTNNNNNAGG 2 cut(s) 438, 808
EcoO109I RGGNCCY 2 cut(s) 629, 758
EcoRII CCWGG 2 cut(s) 312, 748
EcoRV GATATC 1 cut(s) 409
FaeI CATG 2 cut(s) 797, 842
FatI CATG 2 cut(s) 793, 838
FauI CCCGC 1 cut(s) 629
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 724
Fsp4HI GCNGC 1 cut(s) 231
FspAI RTGCGCAY 1 cut(s) 32
FspBI CTAG 2 cut(s) 258, 633
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 2 cut(s) 32, 358
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 506, 732
HhaI GCGC 2 cut(s) 33, 359
Hin1II CATG 2 cut(s) 797, 842
Hin6I GCGC 2 cut(s) 31, 357
HinP1I GCGC 2 cut(s) 31, 357
HinfI GANTC 4 cut(s) 50, 124, 130, 613
HphI GGTGA 5 cut(s) 83, 160, 184, 322, 634
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 129, 430
Hpy188III TCNNGA 4 cut(s) 38, 150, 158, 258
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 434, 435
HpyCH4III ACNGT 3 cut(s) 334, 370, 550
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 88, 437, 553, 871
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 239, 420, 523, 642
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 2 cut(s) 797, 842
HspAI GCGC 2 cut(s) 31, 357
Kzo9I GATC 2 cut(s) 376, 497
LmnI GCTCC 2 cut(s) 247, 487
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 2 cut(s) 258, 633
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 622
MalI GATC 2 cut(s) 378, 499
MboI GATC 2 cut(s) 376, 497
MboII GAAGA 5 cut(s) 215, 702, 728, 734, 737
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 497
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 4 cut(s) 338, 686, 771, 814
MseI TTAA 5 cut(s) 282, 303, 468, 659, 819
MspR9I CCNGG 2 cut(s) 314, 750
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 2 cut(s) 314, 750
MwoI GCNNNNNNNGC 5 cut(s) 94, 239, 420, 523, 642
NdeII GATC 2 cut(s) 376, 497
NlaIII CATG 2 cut(s) 797, 842
NlaIV GGNNCC 2 cut(s) 489, 499
NmuCI GTSAC 1 cut(s) 622
NsbI TGCGCA 1 cut(s) 32
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 3 cut(s) 50, 124, 613
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 456
PpuMI RGGWCCY 2 cut(s) 629, 758
PshBI ATTAAT 1 cut(s) 282
Psp5II RGGWCCY 2 cut(s) 629, 758
Psp6I CCWGG 2 cut(s) 312, 748
PspGI CCWGG 2 cut(s) 312, 748
PspN4I GGNNCC 2 cut(s) 489, 499
PspPI GGNCC 2 cut(s) 629, 758
PspPPI RGGWCCY 2 cut(s) 629, 758
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 4 cut(s) 251, 338, 735, 769
RsaNI GTAC 4 cut(s) 250, 337, 734, 768
SaqAI TTAA 5 cut(s) 282, 303, 468, 659, 819
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 376, 497
Sau96I GGNCC 2 cut(s) 629, 758
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 314, 750
SfcI CTRYAG 2 cut(s) 64, 435
SinI GGWCC 2 cut(s) 629, 758
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SnaBI TACGTA 1 cut(s) 456
SsiI CCGC 2 cut(s) 636, 847
SspMI CTAG 2 cut(s) 258, 633
StyD4I CCNGG 2 cut(s) 312, 748
TaaI ACNGT 3 cut(s) 334, 370, 550
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 37, 53, 379
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 3 cut(s) 50, 124, 613
Tru1I TTAA 5 cut(s) 282, 303, 468, 659, 819
Tru9I TTAA 5 cut(s) 282, 303, 468, 659, 819
TscAI CASTG 2 cut(s) 178, 202
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 5 cut(s) 5, 402, 735, 810, 827
TspRI CASTG 2 cut(s) 178, 202
VpaK11BI GGWCC 2 cut(s) 629, 758
VspI ATTAAT 1 cut(s) 282
XagI CCTNNNNNAGG 2 cut(s) 438, 808
XapI RAATTY 5 cut(s) 178, 219, 389, 541, 663
XbaI TCTAGA 1 cut(s) 257
XspI CTAG 2 cut(s) 258, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.