Rh5DG161400

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001312
Physical Location & Seq
Reverse (-)
16886146 .. 16886983
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG161400.1

Sequence Viewer

Length: 411 bp
ATGAACAAGACATTACCTTACATTGCCCAGTCAAATTCCCTCGATTCAAAAGACCAGTTTCCATTTTACATCGAGATTGACTCTGTACCGCCACCGCCACGTGCTCCTCCAACCCTGGATAAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGTGCCGTACTGGTCCTCCGACGACAAGGTCCAGGTCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCATCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGTCGGGACTTCCACAATGCCCTTGCCAATAAGGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGTGAGCACCAATCGCTGCTCTTTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

136

Amino Acids

15.07

Weight (kDa)

9.66

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 179, 359
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 3 cut(s) 89, 95, 177
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 34, 375
AcvI CACGTG 1 cut(s) 101
AfaI GTAC 2 cut(s) 87, 186
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 48, 277
AjnI CCWGG 3 cut(s) 114, 208, 354
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 2 cut(s) 106, 389
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 151, 221, 396
ApoI RAATTY 2 cut(s) 34, 375
AspS9I GGNCC 3 cut(s) 190, 206, 319
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 3 cut(s) 190, 206, 319
BanI GGYRCC 2 cut(s) 179, 359
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 106, 389
BbvI GCAGC 3 cut(s) 138, 233, 383
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 116, 210, 356
BcnI CCSGG 1 cut(s) 259
BisI GCNGC 3 cut(s) 152, 222, 397
BlsI GCNGC 3 cut(s) 153, 223, 398
Bme1390I CCNGG 4 cut(s) 116, 210, 259, 356
Bme18I GGWCC 3 cut(s) 190, 206, 319
BmgT120I GGNCC 3 cut(s) 190, 206, 319
BmiI GGNNCC 2 cut(s) 181, 361
BmrFI CCNGG 4 cut(s) 116, 210, 259, 356
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuMI CCSGG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 114, 355
BsaWI WCCGGW 2 cut(s) 156, 379
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 28, 55, 192
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 3 cut(s) 116, 210, 356
BseDI CCNNGG 2 cut(s) 114, 355
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 3 cut(s) 28, 55, 192
BseRI GAGGAG 2 cut(s) 96, 244
BseXI GCAGC 3 cut(s) 138, 233, 383
BseYI CCCAGC 1 cut(s) 224
BshNI GGYRCC 2 cut(s) 179, 359
BsiHKAI GWGCWC 2 cut(s) 106, 389
BsiSI CCGG 3 cut(s) 157, 258, 380
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 106, 389
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 3 cut(s) 89, 95, 177
BspEI TCCGGA 1 cut(s) 156
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 181, 361
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 2 cut(s) 179, 359
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 3 cut(s) 28, 55, 192
BssECI CCNNGG 2 cut(s) 114, 355
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 116, 210, 356
Bst6I CTCTTC 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 151, 393
BstNI CCWGG 3 cut(s) 116, 210, 356
BstSCI CCNGG 4 cut(s) 114, 208, 257, 354
BstV1I GCAGC 3 cut(s) 138, 233, 383
BstV2I GAAGAC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 190, 206, 319
CseI GACGC 2 cut(s) 157, 256
Csp6I GTAC 2 cut(s) 86, 185
CviAII CATG 1 cut(s) 334
CviJI RGCY 2 cut(s) 224, 273
CviKI_1 RGCY 2 cut(s) 224, 273
CviQI GTAC 2 cut(s) 86, 185
DdeI CTNAG 1 cut(s) 408
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DrdI GACNNNNNNGTC 1 cut(s) 204
DseDI GACNNNNNNGTC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco47I GGWCC 3 cut(s) 190, 206, 319
Eco72I CACGTG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 3 cut(s) 114, 208, 354
FaeI CATG 1 cut(s) 337
FaiI YATR 1 cut(s) 335
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 152, 222, 397
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 152, 222, 397
GluI GCNGC 3 cut(s) 152, 222, 397
GsaI CCCAGC 1 cut(s) 228
HapII CCGG 3 cut(s) 157, 258, 380
HgaI GACGC 2 cut(s) 157, 256
Hin1II CATG 1 cut(s) 337
HinfI GANTC 4 cut(s) 44, 80, 162, 232
HpaII CCGG 3 cut(s) 157, 258, 380
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 139, 197
Hpy188III TCNNGA 6 cut(s) 73, 157, 166, 215, 290, 334
Hpy99I CGWCG 2 cut(s) 201, 272
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 145, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 393
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 1 cut(s) 337
Kpn2I TCCGGA 1 cut(s) 156
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 2 cut(s) 109, 159
Lsp1109I GCAGC 3 cut(s) 138, 233, 383
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 100
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 181, 227
MhlI GDGCHC 2 cut(s) 106, 389
MluCI AATT 3 cut(s) 34, 277, 375
MlyI GAGTC 2 cut(s) 74, 241
MmeI TCCRAC 2 cut(s) 134, 220
MnlI CCTC 6 cut(s) 50, 117, 124, 167, 203, 222
MroI TCCGGA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 157, 258, 380
MspR9I CCNGG 4 cut(s) 116, 210, 259, 356
MvaI CCWGG 3 cut(s) 116, 210, 356
MwoI GCNNNNNNNGC 2 cut(s) 151, 393
NciI CCSGG 1 cut(s) 259
NdeII GATC 1 cut(s) 261
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 181, 361
PagI TCATGA 1 cut(s) 333
PfeI GAWTC 2 cut(s) 44, 162
PflFI GACNNNGTC 1 cut(s) 204
PkrI GCNGC 3 cut(s) 153, 223, 398
PleI GAGTC 2 cut(s) 74, 240
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 2 cut(s) 74, 240
Ppu21I YACGTR 1 cut(s) 101
Psp6I CCWGG 3 cut(s) 114, 208, 354
PspCI CACGTG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 3 cut(s) 114, 208, 354
PspN4I GGNNCC 2 cut(s) 181, 361
PspPI GGNCC 3 cut(s) 190, 206, 319
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 87, 186
RsaNI GTAC 2 cut(s) 86, 185
SatI GCNGC 3 cut(s) 152, 222, 397
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 3 cut(s) 190, 206, 319
SchI GAGTC 2 cut(s) 74, 241
ScrFI CCNGG 4 cut(s) 116, 210, 259, 356
SduI GDGCHC 2 cut(s) 106, 389
SetI ASST 6 cut(s) 19, 103, 208, 214, 226, 357
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 3 cut(s) 190, 206, 319
Sse9I AATT 3 cut(s) 34, 277, 375
SsiI CCGC 3 cut(s) 89, 95, 177
StyD4I CCNGG 4 cut(s) 114, 208, 257, 354
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 42, 72
TasI AATT 3 cut(s) 34, 277, 375
TfiI GAWTC 2 cut(s) 44, 162
TseI GCWGC 3 cut(s) 151, 221, 396
TspDTI ATGAA 3 cut(s) 17, 322, 350
Tth111I GACNNNGTC 1 cut(s) 204
VpaK11BI GGWCC 3 cut(s) 190, 206, 319
XapI RAATTY 2 cut(s) 34, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.