Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

40112777 .. 40114475

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAACATTTTCTTCAATGCTTCAAAAGTGCTTTTGAGAATCTGACTCAATTGTTGATAGCTTCAAGAAATCTTGAGTTTTTCACCAGTGGAAATCTTGAGTTTTTCACCAGTGGATACTGCTATCTTATTCAAATTCTTCCTGCTGCTGCCGTTGCTCCTATGTACTTCTCTAGAAAAATTGAGCTTGGTGTCATTAATCAGTCAGTATCGGCTTTTAATCATATCCTGGGGGACTTCTCCCTCACCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGCCATTCTGACCCTGCAGAAGGGATAAGTCTTATGTATAGTAATGTTAAAACTTTAGCTGAACTGGAGCCAAATGGATGCATACCCATAGATAAGCAACAAAAGCTACTGGACATAGAGAATTTGACTGTGCAAACACCAAGTAGCACTACATTTATTAGGGATTTATCATTGGTAATCAACAATAATGAGAATCTATTGGTGACAGGACCTAGAGGGAGTGGTAAGACTTATTTGTTAAGAATTTTGGCTGGTCTTTGGAGTGCTGGAAGAGGAAAGATCACATTCTATGTGGAAGATGAAGAAGAGCTTGTACCATCCAATTCTCCAAGTGTAGGTCCTCTTGGTACTGCTAATGATAAATATGGGGAACATGAAAGACCCTCAAATAGGAGTTATAAGGGCATATTTTTCGTTCCTGTGAAGCGGAAAGACGAGCAATGCAGCTTGCAGATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

5.07

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	166 - 209	3.5e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AciI	CCGC	1 cut(s)	763
AcsI	RAATTY	4 cut(s)	135, 305, 457, 579
AfaI	GTAC	4 cut(s)	167, 254, 651, 685
AfiI	CCNNNNNNNGG	3 cut(s)	356, 671, 726
AgsI	TTSAA	4 cut(s)	17, 25, 66, 134
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	7 cut(s)	62, 187, 330, 395, 442, 646, 783
AluI	AGCT	7 cut(s)	62, 187, 330, 395, 442, 646, 783
ApeKI	GCWGC	3 cut(s)	146, 149, 780
ApoI	RAATTY	4 cut(s)	135, 305, 457, 579
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	545, 674
AsuHPI	GGTGA	4 cut(s)	76, 100, 238, 550
AvaII	GGWCC	2 cut(s)	545, 674
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbvI	GCAGC	3 cut(s)	133, 136, 792
BccI	CCATC	1 cut(s)	661
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	174, 549
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	147, 150, 781
BlsI	GCNGC	3 cut(s)	148, 151, 782
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	545, 674
BmgT120I	GGNCC	2 cut(s)	545, 674
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	95, 119
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 671, 726
Bse1I	ACTGG	4 cut(s)	87, 111, 405, 450
Bse3DI	GCAATG	1 cut(s)	782
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	419, 653
BseLI	CCNNNNNNNGG	3 cut(s)	356, 671, 726
BseMI	GCAATG	1 cut(s)	782
BseNI	ACTGG	4 cut(s)	87, 111, 405, 450
BseXI	GCAGC	3 cut(s)	133, 136, 792
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	356, 671, 726
BsmFI	GGGAC	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	292, 615
BspACI	CCGC	1 cut(s)	763
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	782
BsrI	ACTGG	4 cut(s)	87, 111, 405, 450
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	292, 615
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	250, 466
Bst6I	CTCTTC	2 cut(s)	601, 636
BstC8I	GCNNGC	1 cut(s)	785
BstENI	CCTNNNNNAGG	2 cut(s)	354, 724
BstF5I	GGATG	2 cut(s)	419, 653
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	295, 618
BstMBI	GATC	2 cut(s)	292, 615
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 281, 336, 439
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	133, 136, 792
BsuI	GTATCC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	419, 653
BtsIMutI	CAGTG	2 cut(s)	94, 118
Cac8I	GCNNGC	1 cut(s)	785
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	545, 674
Csp6I	GTAC	4 cut(s)	166, 253, 650, 684
CviAII	CATG	1 cut(s)	710
CviQI	GTAC	4 cut(s)	166, 253, 650, 684
DpnI	GATC	2 cut(s)	294, 617
DpnII	GATC	2 cut(s)	292, 615
Eam1104I	CTCTTC	2 cut(s)	601, 636
EarI	CTCTTC	2 cut(s)	601, 636
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	545, 674
EcoNI	CCTNNNNNAGG	2 cut(s)	354, 724
EcoO109I	RGGNCCY	2 cut(s)	545, 674
EcoRII	CCWGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	419
FaeI	CATG	1 cut(s)	713
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	147, 150, 781
FokI	GGATG	2 cut(s)	426, 640
Fsp4HI	GCNGC	3 cut(s)	147, 150, 781
FspBI	CTAG	2 cut(s)	174, 549
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	147, 150, 781
GsuI	CTGGAG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	713
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	40, 46, 529
HphI	GGTGA	4 cut(s)	76, 100, 238, 550
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	45, 346
Hpy188III	TCNNGA	4 cut(s)	66, 74, 98, 174
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	2 cut(s)	250, 466
HpyCH4V	TGCA	6 cut(s)	4, 353, 417, 469, 780, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 281, 336, 439
Hsp92II	CATG	1 cut(s)	713
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	292, 615
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	163, 403
Lsp1109I	GCAGC	3 cut(s)	133, 136, 792
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	174, 549
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	2 cut(s)	294, 617
MboI	GATC	2 cut(s)	292, 615
MboII	GAAGA	6 cut(s)	5, 131, 618, 644, 650, 653
MfeI	CAATTG	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	254, 545, 602, 687, 730
Mph1103I	ATGCAT	1 cut(s)	419
MseI	TTAA	4 cut(s)	198, 219, 384, 575
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	155, 281, 336, 439
NdeII	GATC	2 cut(s)	292, 615
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	40, 529
PkrI	GCNGC	3 cut(s)	148, 151, 782
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	2 cut(s)	545, 674
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	735
Psp5II	RGGWCCY	2 cut(s)	545, 674
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	545, 674
PspPPI	RGGWCCY	2 cut(s)	545, 674
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	4 cut(s)	167, 254, 651, 685
RsaNI	GTAC	4 cut(s)	166, 253, 650, 684
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	198, 219, 384, 575
SatI	GCNGC	3 cut(s)	147, 150, 781
Sau3AI	GATC	2 cut(s)	292, 615
Sau96I	GGNCC	2 cut(s)	545, 674
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	9 cut(s)	64, 189, 332, 397, 444, 550, 648, 676, 785
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	545, 674
SmlI	CTYRAG	2 cut(s)	74, 98
SmoI	CTYRAG	2 cut(s)	74, 98
SsiI	CCGC	1 cut(s)	763
SspMI	CTAG	2 cut(s)	174, 549
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	250, 466
TaqI	TCGA	1 cut(s)	295
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	40, 529
Tru1I	TTAA	4 cut(s)	198, 219, 384, 575
Tru9I	TTAA	4 cut(s)	198, 219, 384, 575
TscAI	CASTG	2 cut(s)	94, 118
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	146, 149, 780
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	318, 651, 726
TspRI	CASTG	2 cut(s)	94, 118
VpaK11BI	GGWCC	2 cut(s)	545, 674
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	2 cut(s)	354, 724
XapI	RAATTY	4 cut(s)	135, 305, 457, 579
XbaI	TCTAGA	1 cut(s)	173
XspI	CTAG	2 cut(s)	174, 549
Zsp2I	ATGCAT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.