Rorug05G0074700

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001312
Physical Location & Seq
Forward (+)
6440723 .. 6442202
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0074700.1

Sequence Viewer

Length: 1368 bp
ATGGTGCTATTAGAAGATCTTCATTCTGGAAAACTTTCCAAGGATGAAGAAGAAAATCAAGGTGCAGGTGAAGCTAATAAAGAAGCAGATCTTCAATCTAGAGGACTTTCAAACGTTGAAGAAGAAAATCAAGATACACTACTTGAACAACGTATACACCAAGAACTCCAAAATGCGATCAACAAAGACCTTCTCTTTAAAGAGCTCGTCAAGTCACCACAAACCATCGTCAAAGATATCAGGACGTACATCAAAAGTTACCGTCAGACTTCAGGCTTTGAGATCAGCACTTGCAACGACAAGATCCTTCAGGTTATATACAAGAACAGTGAGCAAGTACTTTTGGAAATTGGTAAATTGAAAGCATTTGCTCGTAGTAATCATAACACCTTCCCGGTGTCATCAAGGGCTGATGCCAACCAAAAATACAACTTCGAGCTCGACCGCCATGTGCTAGAAAAGGAGGATGCACAAAGAAAAAGAAAGAATGAACACAAGTTTGAAGTCCTCGACGCTCTTCTCACTATCATTTACGAGTTGTGTATGAAGGAGATAACCACGGAAATTCGTACCGTCTATTACCGAAATCCTGAACTCTTCAAAAGTCGAGACAAGGTCAGTGCAGCCATTGACGATCTATGCTGTATGATTGGCTGCACTAGATCTAGCCTTCATGTCTATGCAAGTGAAAAGGGTATTGTTTTCGGTAATATTTCTTTCAGTGTGGGAAGTCAGCGGTATAACTGTACTACCGGCGGCATTAAAGGAACACCGATCCCGTCAAAGACCGATAAGATTAAAAGTATGAAAAATAAGGATGCACTATTTATATTAGTCGTGGAGAAAGAGACAGTATTTCAACGATTGGTCGAGGACGGATTTTGCAGAAAGTATCGCTGCATCTTAATAACAGCAAAAGGCATGCCAGACGTCGCAAGCAGATTCTTTTTGAGAAAAATGTGGAGTGAGTTTCAGCTTCCTGTGTTTGCACTTGTGGACTTCGATCCATATGGATTGAAGATTCTTTCCGTCTTCCGTAATGGGTCGAAGAACATGTCTTTTGACAGTGAGAATCTCACCACACCAGATATTAAGTTGATAGGTATGCTGCACAAGGATATAGAAAGATATCAAATACGTGAAGATTTTAAGTTGAAGATGACTGATTTTGATATAAAGACTGCAAGATCATTGTTGAAGAAACCATATATTAGTGAGGAAGAAAAGGAGGGGCTGCGGTATATGTTGGACAACGGAATAAAGTGTGAAGTCGAAGCTTGGTATTCTCATGGCATTGAATTTTTGTCGAAGGTAGTTTTGCCCCTAAATATTCAGAACATGGTTGTTCCCGGCCAGCCAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

455

Amino Acids

52.32

Weight (kDa)

7.53

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 166 - 226 1.6e-15 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 276 - 443 7.9e-56 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
AatII GACGTC 1 cut(s) 933
Acc36I ACCTGC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 154
AciI CCGC 4 cut(s) 445, 736, 756, 1237
AclI AACGTT 1 cut(s) 114
AclWI GGATC 3 cut(s) 298, 769, 998
AcoI YGGCCR 1 cut(s) 1351
AcsI RAATTY 2 cut(s) 564, 1298
AcuI CTGAAG 2 cut(s) 255, 293
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 4 cut(s) 248, 339, 571, 748
AflIII ACRYGT 1 cut(s) 1053
AluBI AGCT 5 cut(s) 74, 205, 439, 976, 1277
AluI AGCT 5 cut(s) 74, 205, 439, 976, 1277
Alw21I GWGCWC 2 cut(s) 207, 441
Alw26I GTCTC 2 cut(s) 603, 842
AlwI GGATC 3 cut(s) 298, 769, 998
AoxI GGCC 1 cut(s) 1351
ApeKI GCWGC 5 cut(s) 623, 654, 897, 1108, 1234
ApoI RAATTY 2 cut(s) 564, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 1040, 1072
Asp700I GAANNNNTTC 2 cut(s) 18, 34
AsuC2I CCSGG 2 cut(s) 395, 1350
AsuHPI GGTGA 3 cut(s) 80, 207, 1069
BanII GRGCYC 2 cut(s) 207, 441
BbsI GAAGAC 1 cut(s) 1024
Bbv12I GWGCWC 2 cut(s) 207, 441
BbvI GCAGC 5 cut(s) 635, 641, 884, 1095, 1221
BccI CCATC 1 cut(s) 233
BcnI CCSGG 2 cut(s) 395, 1350
BcoDI GTCTC 2 cut(s) 603, 842
BfaI CTAG 4 cut(s) 99, 455, 660, 666
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 3 cut(s) 16, 88, 662
BisI GCNGC 6 cut(s) 624, 655, 757, 898, 1109, 1235
BlsI GCNGC 6 cut(s) 625, 656, 758, 899, 1110, 1236
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 395, 1350
BmrFI CCNGG 2 cut(s) 395, 1350
BmsI GCATC 4 cut(s) 403, 457, 808, 909
BpiI GAAGAC 1 cut(s) 1024
BpuMI CCSGG 2 cut(s) 395, 1350
BsaAI YACGTR 1 cut(s) 1139
BsaHI GRCGYC 1 cut(s) 930
BsaJI CCNNGG 2 cut(s) 39, 558
Bse118I RCCGGY 1 cut(s) 752
BseDI CCNNGG 2 cut(s) 39, 558
BseGI GGATG 3 cut(s) 49, 472, 823
BseXI GCAGC 5 cut(s) 635, 641, 884, 1095, 1221
BsgI GTGCAG 4 cut(s) 84, 640, 642, 1094
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 1 cut(s) 1353
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 2 cut(s) 207, 441
BsiSI CCGG 3 cut(s) 395, 753, 1350
BsmAI GTCTC 2 cut(s) 603, 842
BsnI GGCC 1 cut(s) 1353
Bsp1286I GDGCHC 2 cut(s) 207, 441
BspACI CCGC 4 cut(s) 445, 736, 756, 1237
BspANI GGCC 1 cut(s) 1353
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 3 cut(s) 298, 769, 998
BspQI GCTCTTC 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 752
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 2 cut(s) 39, 558
BssNAI GTATAC 1 cut(s) 155
BssNI GRCGYC 1 cut(s) 930
BssT1I CCWWGG 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 155
Bst4CI ACNGT 6 cut(s) 263, 329, 574, 746, 853, 1067
Bst6I CTCTTC 2 cut(s) 522, 602
BstACI GRCGYC 1 cut(s) 930
BstBAI YACGTR 1 cut(s) 1139
BstC8I GCNNGC 3 cut(s) 923, 937, 1355
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 3 cut(s) 49, 472, 823
BstMAI GTCTC 2 cut(s) 603, 842
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 925, 1057
BstSCI CCNGG 2 cut(s) 393, 1348
BstV1I GCAGC 5 cut(s) 635, 641, 884, 1095, 1221
BstV2I GAAGAC 1 cut(s) 1024
BstX2I RGATCY 4 cut(s) 16, 88, 303, 662
BstYI RGATCY 4 cut(s) 16, 88, 303, 662
BstZ17I GTATAC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 1353
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 3 cut(s) 49, 472, 823
BtsIMutI CAGTG 4 cut(s) 334, 625, 727, 1072
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 923, 937, 1355
Cfr10I RCCGGY 1 cut(s) 752
CseI GACGC 1 cut(s) 521
Csp6I GTAC 4 cut(s) 247, 338, 570, 747
CviAII CATG 6 cut(s) 449, 674, 922, 1054, 1289, 1339
CviQI GTAC 4 cut(s) 247, 338, 570, 747
DraI TTTAAA 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 1351
Eam1104I CTCTTC 2 cut(s) 522, 602
EarI CTCTTC 2 cut(s) 522, 602
Ecl136II GAGCTC 2 cut(s) 205, 439
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 207, 441
Eco32I GATATC 2 cut(s) 238, 1130
Eco53kI GAGCTC 2 cut(s) 205, 439
Eco57I CTGAAG 2 cut(s) 255, 293
EcoICRI GAGCTC 2 cut(s) 205, 439
EcoRV GATATC 2 cut(s) 238, 1130
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 207, 441
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 6 cut(s) 452, 677, 925, 1057, 1292, 1342
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 6 cut(s) 448, 673, 921, 1053, 1288, 1338
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 6 cut(s) 624, 655, 757, 898, 1109, 1235
FokI GGATG 3 cut(s) 56, 479, 830
FriOI GRGCYC 2 cut(s) 207, 441
Fsp4HI GCNGC 6 cut(s) 624, 655, 757, 898, 1109, 1235
FspBI CTAG 4 cut(s) 99, 455, 660, 666
GluI GCNGC 6 cut(s) 624, 655, 757, 898, 1109, 1235
HaeIII GGCC 1 cut(s) 1353
HapII CCGG 3 cut(s) 395, 753, 1350
HgaI GACGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 6 cut(s) 452, 677, 925, 1057, 1292, 1342
HindIII AAGCTT 1 cut(s) 1275
HinfI GANTC 3 cut(s) 942, 1021, 1072
HpaII CCGG 3 cut(s) 395, 753, 1350
HphI GGTGA 3 cut(s) 80, 207, 1069
Hpy166II GTNNAC 2 cut(s) 155, 997
Hpy188I TCNGA 2 cut(s) 267, 1335
Hpy188III TCNNGA 6 cut(s) 27, 99, 131, 241, 590, 608
Hpy8I GTNNAC 2 cut(s) 155, 997
Hpy99I CGWCG 2 cut(s) 515, 935
HpyAV CCTTC 6 cut(s) 200, 317, 400, 541, 680, 1303
HpyCH4III ACNGT 6 cut(s) 263, 329, 574, 746, 853, 1067
HpyCH4IV ACGT 5 cut(s) 114, 151, 245, 930, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 5 cut(s) 114, 151, 245, 930, 1138
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 6 cut(s) 452, 677, 925, 1057, 1292, 1342
LguI GCTCTTC 1 cut(s) 522
Lsp1109I GCAGC 5 cut(s) 635, 641, 884, 1095, 1221
LweI GCATC 4 cut(s) 403, 457, 808, 909
MaeI CTAG 4 cut(s) 99, 455, 660, 666
MaeII ACGT 5 cut(s) 114, 151, 245, 930, 1138
MaeIII GTNAC 2 cut(s) 213, 257
MflI RGATCY 4 cut(s) 16, 88, 303, 662
MhlI GDGCHC 2 cut(s) 207, 441
MluCI AATT 4 cut(s) 348, 356, 564, 1298
MmeI TCCRAC 1 cut(s) 1227
MnlI CCTC 6 cut(s) 95, 457, 518, 865, 1210, 1222
MroXI GAANNNNTTC 2 cut(s) 18, 34
MseI TTAA 6 cut(s) 198, 762, 798, 905, 1092, 1149
MslI CAYNNNNRTG 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 736
MspI CCGG 3 cut(s) 395, 753, 1350
MspR9I CCNGG 2 cut(s) 395, 1350
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 2 cut(s) 395, 1350
NdeI CATATG 1 cut(s) 1009
NlaIII CATG 6 cut(s) 452, 677, 925, 1057, 1292, 1342
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 2 cut(s) 925, 1057
PaeI GCATGC 1 cut(s) 925
PaqCI CACCTGC 1 cut(s) 56
PciI ACATGT 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 522
PdmI GAANNNNTTC 2 cut(s) 18, 34
PfeI GAWTC 3 cut(s) 942, 1021, 1072
PflFI GACNNNGTC 1 cut(s) 614
PkrI GCNGC 6 cut(s) 625, 656, 758, 899, 1110, 1236
Ppu21I YACGTR 1 cut(s) 1139
PscI ACATGT 1 cut(s) 1053
Psp124BI GAGCTC 2 cut(s) 207, 441
Psp1406I AACGTT 1 cut(s) 114
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PsuI RGATCY 4 cut(s) 16, 88, 303, 662
PsyI GACNNNGTC 1 cut(s) 614
RsaI GTAC 4 cut(s) 248, 339, 571, 748
RsaNI GTAC 4 cut(s) 247, 338, 570, 747
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 2 cut(s) 207, 441
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 6 cut(s) 198, 762, 798, 905, 1092, 1149
SatI GCNGC 6 cut(s) 624, 655, 757, 898, 1109, 1235
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 395, 1350
SduI GDGCHC 2 cut(s) 207, 441
SfaNI GCATC 4 cut(s) 403, 457, 808, 909
SmiMI CAYNNNNRTG 1 cut(s) 678
SphI GCATGC 1 cut(s) 925
Sse9I AATT 4 cut(s) 348, 356, 564, 1298
SsiI CCGC 4 cut(s) 445, 736, 756, 1237
SspI AATATT 2 cut(s) 712, 1330
SspMI CTAG 4 cut(s) 99, 455, 660, 666
SstI GAGCTC 2 cut(s) 207, 441
StyD4I CCNGG 2 cut(s) 393, 1348
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 6 cut(s) 263, 329, 574, 746, 853, 1067
TaiI ACGT 5 cut(s) 117, 154, 248, 933, 1141
TaqI TCGA 9 cut(s) 435, 441, 510, 607, 870, 1002, 1046, 1272, 1307
TaqII GACCGA 1 cut(s) 803
TasI AATT 4 cut(s) 348, 356, 564, 1298
TatI WGTACW 2 cut(s) 337, 746
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 3 cut(s) 942, 1021, 1072
Tru1I TTAA 6 cut(s) 198, 762, 798, 905, 1092, 1149
Tru9I TTAA 6 cut(s) 198, 762, 798, 905, 1092, 1149
TscAI CASTG 4 cut(s) 334, 625, 727, 1072
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 5 cut(s) 623, 654, 897, 1108, 1234
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 6 cut(s) 11, 60, 504, 560, 662, 821
TspGWI ACGGA 5 cut(s) 575, 891, 1018, 1025, 1269
TspRI CASTG 4 cut(s) 334, 625, 727, 1072
Tth111I GACNNNGTC 1 cut(s) 614
XapI RAATTY 2 cut(s) 564, 1298
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 925, 1057
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 18, 34
XspI CTAG 4 cut(s) 99, 455, 660, 666
ZraI GACGTC 1 cut(s) 931
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.