Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001312

Physical Location & Seq

Genomic Coordinates Reverse (-)

50481379 .. 50482380

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTACCTCTCTAGAAAAATTGAGCTTGGTGTCATTAATCAGTCAGTATCGGCTTTTAATCATATCCTGGGGGACTTCTCCCTCACCGTGTACCAATTTCAGTCTATAAGCGCATTTTCAGCAGTAATTGATCGACTTGATGAATTTGATGATTATTTGGATATCAGCTCTCAACGTCATTCTGAACCTGCAGAAGGGATAAGTCTTACGTATAGTAATGTTAAAACTTTAGCTGAACTGGAGCCAAATGGATGCATACCCATAGATAAGCAACAAAAGCTACTGGACATAGAGAATTTGACTGTGCAAACACCAAGTAGCACTACATTGATTAGGGATTTATCATTGGTAATCAACAATAATGAGAATCTATGGGTGACAGGACCTAGCGGGAGTGGTAAGACTTATTTGTTAAGAATTTTGGCTGGTCTTTGGAGTGCTGGAAGAGGAAAGATCACATTCTATGTGGAAGATGAAGAAGAGCTTGTACCATCCAATTTTCCAGGTGTAGGTCCTCTTGGTACTGCTAATGATAAATATGGGGAACATGAAAGACCCTCAAATAGGAGTTATAAGGGCATATTTTTCGTTCCTGTGAAGCGGAAAGACGAGCAATGCAGCTTGCAGATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane_2 ABC_tran

Protein Analysis

211

Amino Acids

23.55

Weight (kDa)

4.92

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	112 - 155	3.9e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54350
fragaria_vesca	FvH4_3g13561 FvH4_3g13561 FvH4_3g13561 FvH4_3g13563 FvH4_3g13622
malus_domestica	MD10G1219800.v1.1 MD10G1219900.v1.1 MD10G1220200.v1.1 MD10G1220300.v1.1 MD10G1220400.v1.1
prunus_persica	Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1 Prupe.4G123900_v2.0.a1
pyrus_communis	pycom05g21750 pycom10g18600 pycom10g18610 pycom10g18620
rosa_chinensis	RchiOBHm_Chr1g0347801 RchiOBHm_Chr2g0171001 RchiOBHm_Chr5g0022531 RchiOBHm_Chr5g0022571 RchiOBHm_Chr5g0022721
rosa_laevigata	RLG00000032669 RLG00000035289
rosa_multiflora	Rmu_co8226687.1_g000001 Rmu_sc0000103.1_g000055 Rmu_sc0000401.1_g000001 Rmu_sc0002769.1_g000010 Rmu_sc0011329.1_g000001 Rmu_sc0022800.1_g000001 Rmu_sc0022800.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056520
rosa_rugosa	Rorug05G0074700
rosa_samantha	Rh1CG109200 Rh1DG117500 Rh5AG161400 Rh5BG160300 Rh5BG160600 Rh5CG174700 Rh5CG175000 Rh5CG316700 Rh5DG161000 Rh5DG161400 Rh6AG222900
rosa_wichuraiana	Rw0G005540 Rw1G024210 Rw2G014100 Rw5G014390 Rw5G014470 Rw6G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	196
AciI	CCGC	2 cut(s)	390, 601
AcsI	RAATTY	3 cut(s)	143, 295, 417
AfaI	GTAC	4 cut(s)	5, 92, 489, 523
AfiI	CCNNNNNNNGG	3 cut(s)	194, 509, 564
AjnI	CCWGG	2 cut(s)	66, 502
AluBI	AGCT	6 cut(s)	25, 168, 233, 280, 484, 621
AluI	AGCT	6 cut(s)	25, 168, 233, 280, 484, 621
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	3 cut(s)	143, 295, 417
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	383, 512
AsuHPI	GGTGA	2 cut(s)	76, 388
AvaII	GGWCC	2 cut(s)	383, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	1 cut(s)	499
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	2 cut(s)	68, 504
BfaI	CTAG	2 cut(s)	12, 387
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	620
Bme1390I	CCNGG	2 cut(s)	68, 504
Bme18I	GGWCC	2 cut(s)	383, 512
BmgT120I	GGNCC	2 cut(s)	383, 512
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	68, 504
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 509, 564
Bse1I	ACTGG	2 cut(s)	243, 288
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	68, 504
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	257, 491
BseLI	CCNNNNNNNGG	3 cut(s)	194, 509, 564
BseMI	GCAATG	1 cut(s)	620
BseNI	ACTGG	2 cut(s)	243, 288
BseXI	GCAGC	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	194, 509, 564
BsmFI	GGGAC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	130, 453
BspACI	CCGC	2 cut(s)	390, 601
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	243, 288
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	130, 453
Bst2UI	CCWGG	2 cut(s)	68, 504
Bst4CI	ACNGT	2 cut(s)	88, 304
Bst6I	CTCTTC	2 cut(s)	439, 474
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	623
BstENI	CCTNNNNNAGG	2 cut(s)	192, 562
BstF5I	GGATG	2 cut(s)	257, 491
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	133, 456
BstMBI	GATC	2 cut(s)	130, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 277
BstNI	CCWGG	2 cut(s)	68, 504
BstSCI	CCNGG	2 cut(s)	66, 502
BstSFI	CTRYAG	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	257, 491
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	623
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	383, 512
Csp6I	GTAC	4 cut(s)	4, 91, 488, 522
CviAII	CATG	1 cut(s)	548
CviJI	RGCY	9 cut(s)	25, 53, 168, 233, 244, 280, 425, 484, 621
CviKI_1	RGCY	9 cut(s)	25, 53, 168, 233, 244, 280, 425, 484, 621
CviQI	GTAC	4 cut(s)	4, 91, 488, 522
DpnI	GATC	2 cut(s)	132, 455
DpnII	GATC	2 cut(s)	130, 453
Eam1104I	CTCTTC	2 cut(s)	439, 474
EarI	CTCTTC	2 cut(s)	439, 474
Eco105I	TACGTA	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	383, 512
EcoNI	CCTNNNNNAGG	2 cut(s)	192, 562
EcoO109I	RGGNCCY	2 cut(s)	383, 512
EcoRII	CCWGG	2 cut(s)	66, 502
EcoRV	GATATC	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	257
FaeI	CATG	1 cut(s)	551
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	547
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	619
FokI	GGATG	2 cut(s)	264, 478
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	2 cut(s)	12, 387
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	551
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	367
HphI	GGTGA	2 cut(s)	76, 388
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	88, 304
HpyCH4IV	ACGT	2 cut(s)	175, 209
HpyCH4V	TGCA	5 cut(s)	191, 255, 307, 618, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 277
HpySE526I	ACGT	2 cut(s)	175, 209
Hsp92II	CATG	1 cut(s)	551
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	130, 453
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	1 cut(s)	630
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	12, 387
MaeII	ACGT	2 cut(s)	175, 209
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	132, 455
MboI	GATC	2 cut(s)	130, 453
MboII	GAAGA	4 cut(s)	456, 482, 488, 491
MluCI	AATT	8 cut(s)	18, 95, 126, 143, 295, 417, 496, 631
MnlI	CCTC	5 cut(s)	17, 92, 440, 525, 568
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	4 cut(s)	36, 57, 222, 413
MspR9I	CCNGG	2 cut(s)	68, 504
MvaI	CCWGG	2 cut(s)	68, 504
MwoI	GCNNNNNNNGC	2 cut(s)	119, 277
NdeII	GATC	2 cut(s)	130, 453
NlaIII	CATG	1 cut(s)	551
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	210
PpuMI	RGGWCCY	2 cut(s)	383, 512
PshBI	ATTAAT	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	573
Psp5II	RGGWCCY	2 cut(s)	383, 512
Psp6I	CCWGG	2 cut(s)	66, 502
PspGI	CCWGG	2 cut(s)	66, 502
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	383, 512
PspPPI	RGGWCCY	2 cut(s)	383, 512
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	4 cut(s)	5, 92, 489, 523
RsaNI	GTAC	4 cut(s)	4, 91, 488, 522
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	36, 57, 222, 413
SatI	GCNGC	1 cut(s)	619
Sau3AI	GATC	2 cut(s)	130, 453
Sau96I	GGNCC	2 cut(s)	383, 512
ScrFI	CCNGG	2 cut(s)	68, 504
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	383, 512
SnaBI	TACGTA	1 cut(s)	210
Sse9I	AATT	8 cut(s)	18, 95, 126, 143, 295, 417, 496, 631
SsiI	CCGC	2 cut(s)	390, 601
SspMI	CTAG	2 cut(s)	12, 387
StyD4I	CCNGG	2 cut(s)	66, 502
TaaI	ACNGT	2 cut(s)	88, 304
TaiI	ACGT	2 cut(s)	178, 212
TaqI	TCGA	1 cut(s)	133
TasI	AATT	8 cut(s)	18, 95, 126, 143, 295, 417, 496, 631
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	36, 57, 222, 413
Tru9I	TTAA	4 cut(s)	36, 57, 222, 413
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	156, 489, 564
VpaK11BI	GGWCC	2 cut(s)	383, 512
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	2 cut(s)	192, 562
XapI	RAATTY	3 cut(s)	143, 295, 417
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	2 cut(s)	12, 387
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.