FvH4_3g14511

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000806
Physical Location & Seq
Forward (+)
8958909 .. 8962390
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14511.t1

Sequence Viewer

Length: 906 bp
ATGGGGAGAAGAAAGATCGAAATCAAGAAAATCCAAAACAAAGCCTACCTAAAGGCCACCTTTTCGAAGCGGCGAAAGGGTTTGTTCGGAAAAGCTCGTGAGCTTTGTGATATGTGTGGTGCCGAAATCGCCATTCTTACTGTCTCACCGGGTGGAAGATTCTACAATTTTGGCCGTCCTAACGTTGAATCCGTCATAGCTCGCTATTGTGGTGATGAGAGTTCAATTACAGTTGATGAAAATCATGATGATTGTGTTATTAGTCATGAAGATGATGATGAAGATCTAGAAGGCGAGCAACAGAGGGAGTTAGAGGTTAGTACCGATGAGGTCGAGGATGAGGATGATATAGGCTCATCCCACAAGGCCCGCGAGGAGAAGGAGATTATTAATCGTATCAAGGAGATGAATCTTATTGAGCATATTAATAGAGAAAGAGATGGGAGGATGAGGCTTCAGAAGTTTTGGTGGGATGAGGAGAAGCCTATTGATCCAGAACAACTTGAGATGTATTATCATAGCCTAACACAACTGAGAAACAATGTAGTTTCGGTGTTGAATGATAGGAAGATGAGAGAATTGTACGCAAAGGATTATCTAACCTGTGGAGGCACCAAAATCATATGCAAGCCAACTGAAATCGGAGCAGCCCGATTAGAGCCAAACCATGCCACCATGACCGCAACTCCTCAAGACATGCAACACGTGGTCCCTACATCAATGTTAGTCTCATCGTTGCTCCAACCCTTACAATCCGACACTTCGCTAACAAGATCGGAACCACCACCTGCCAGCCACTTTAGAAATATAATTATTTTTTTTCAAATCGAGCTGAAAACCAAACCGACGAAACCGAATCTAGAGCGTCCAAAGATCAGACACCATCTTTTTACAACGGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

302

Amino Acids

34.8

Weight (kDa)

5.98

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 3.7e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 796
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 2 cut(s) 119, 611
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 70, 370, 681
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 440
AcvI CACGTG 1 cut(s) 706
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 2 cut(s) 322, 584
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 4 cut(s) 188, 225, 559, 824
AluBI AGCT 4 cut(s) 95, 103, 200, 832
AluI AGCT 4 cut(s) 95, 103, 200, 832
Alw26I GTCTC 2 cut(s) 148, 733
AlwI GGATC 1 cut(s) 485
AoxI GGCC 3 cut(s) 54, 172, 366
ApeKI GCWGC 1 cut(s) 647
AseI ATTAAT 2 cut(s) 390, 426
AspS9I GGNCC 2 cut(s) 367, 709
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 138, 224
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 709
BanI GGYRCC 2 cut(s) 119, 611
BauI CACGAG 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 706
BbvI GCAGC 1 cut(s) 659
BccI CCATC 2 cut(s) 434, 891
BceAI ACGGC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 148, 733
BfaI CTAG 2 cut(s) 287, 860
BfuAI ACCTGC 1 cut(s) 796
BglII AGATCT 1 cut(s) 283
BisI GCNGC 2 cut(s) 71, 648
BlsI GCNGC 2 cut(s) 72, 649
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 367, 709
BmiI GGNNCC 4 cut(s) 121, 613, 711, 780
BmrFI CCNGG 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 524, 675
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 706
BsaBI GATNNNNATC 3 cut(s) 20, 240, 282
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bse8I GATNNNNATC 3 cut(s) 20, 240, 282
BseGI GGATG 5 cut(s) 343, 349, 356, 453, 478
BseJI GATNNNNATC 3 cut(s) 20, 240, 282
BseMII CTCAG 1 cut(s) 524
BseRI GAGGAG 3 cut(s) 389, 491, 678
BseXI GCAGC 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 56, 174, 368
BshNI GGYRCC 2 cut(s) 119, 611
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 695
BsmAI GTCTC 2 cut(s) 148, 733
BsmFI GGGAC 1 cut(s) 695
BsnI GGCC 3 cut(s) 56, 174, 368
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 5 cut(s) 15, 283, 490, 773, 873
BspACI CCGC 3 cut(s) 70, 370, 681
BspANI GGCC 3 cut(s) 56, 174, 368
BspCNI CTCAG 1 cut(s) 525
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 2 cut(s) 244, 265
BspLI GGNNCC 4 cut(s) 121, 613, 711, 780
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 2 cut(s) 119, 611
BssMI GATC 5 cut(s) 15, 283, 490, 773, 873
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 142, 232, 898
BstBAI YACGTR 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 5 cut(s) 202, 296, 370, 629, 793
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 5 cut(s) 343, 349, 356, 453, 478
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 5 cut(s) 18, 286, 493, 776, 876
BstMAI GTCTC 2 cut(s) 148, 733
BstMBI GATC 5 cut(s) 15, 283, 490, 773, 873
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 3 cut(s) 56, 174, 368
BtsCI GGATG 5 cut(s) 343, 349, 356, 453, 478
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 5 cut(s) 202, 296, 370, 629, 793
CciI TCATGA 2 cut(s) 244, 265
Cfr13I GGNCC 2 cut(s) 367, 709
CseI GACGC 1 cut(s) 854
Csp6I GTAC 2 cut(s) 321, 583
CviAII CATG 5 cut(s) 245, 266, 668, 676, 697
CviQI GTAC 2 cut(s) 321, 583
DdeI CTNAG 1 cut(s) 533
DpnI GATC 5 cut(s) 17, 285, 492, 775, 875
DpnII GATC 5 cut(s) 15, 283, 490, 773, 873
DraIII CACNNNGTG 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 706
FaeI CATG 5 cut(s) 248, 269, 671, 679, 700
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 695
FatI CATG 5 cut(s) 244, 265, 667, 675, 696
FauI CCCGC 1 cut(s) 377
FauNDI CATATG 1 cut(s) 623
Fnu4HI GCNGC 2 cut(s) 71, 648
FokI GGATG 5 cut(s) 343, 350, 356, 460, 485
Fsp4HI GCNGC 2 cut(s) 71, 648
FspBI CTAG 2 cut(s) 287, 860
GluI GCNGC 2 cut(s) 71, 648
HaeIII GGCC 3 cut(s) 56, 174, 368
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 854
Hin1II CATG 5 cut(s) 248, 269, 671, 679, 700
HinfI GANTC 4 cut(s) 159, 188, 409, 856
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 138, 224
Hpy188I TCNGA 6 cut(s) 89, 459, 644, 757, 778, 878
Hpy188III TCNNGA 8 cut(s) 25, 98, 245, 266, 287, 494, 692, 860
Hpy99I CGWCG 1 cut(s) 850
HpyAV CCTTC 2 cut(s) 284, 373
HpyCH4III ACNGT 3 cut(s) 142, 232, 898
HpyCH4IV ACGT 2 cut(s) 183, 705
HpyCH4V TGCA 2 cut(s) 627, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 2 cut(s) 183, 705
Hsp92II CATG 5 cut(s) 248, 269, 671, 679, 700
Kzo9I GATC 5 cut(s) 15, 283, 490, 773, 873
LmnI GCTCC 2 cut(s) 644, 744
LpnPI CCDG 5 cut(s) 162, 507, 616, 801, 805
Lsp1109I GCAGC 1 cut(s) 659
MaeI CTAG 2 cut(s) 287, 860
MaeII ACGT 2 cut(s) 183, 705
MalI GATC 5 cut(s) 17, 285, 492, 775, 875
MboI GATC 5 cut(s) 15, 283, 490, 773, 873
MboII GAAGA 5 cut(s) 21, 168, 281, 293, 580
MflI RGATCY 1 cut(s) 283
MluCI AATT 4 cut(s) 166, 225, 578, 810
MmeI TCCRAC 2 cut(s) 766, 780
MseI TTAA 2 cut(s) 390, 426
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 623
NdeII GATC 5 cut(s) 15, 283, 490, 773, 873
NlaIII CATG 5 cut(s) 248, 269, 671, 679, 700
NlaIV GGNNCC 4 cut(s) 121, 613, 711, 780
NspI RCATGY 1 cut(s) 700
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 2 cut(s) 244, 265
PaqCI CACCTGC 1 cut(s) 796
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 4 cut(s) 159, 188, 409, 856
PkrI GCNGC 2 cut(s) 72, 649
PmaCI CACGTG 1 cut(s) 706
PmlI CACGTG 1 cut(s) 706
Ppu21I YACGTR 1 cut(s) 706
PshBI ATTAAT 2 cut(s) 390, 426
Psp1406I AACGTT 1 cut(s) 183
PspCI CACGTG 1 cut(s) 706
PspN4I GGNNCC 4 cut(s) 121, 613, 711, 780
PspPI GGNCC 2 cut(s) 367, 709
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 322, 584
RsaNI GTAC 2 cut(s) 321, 583
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 390, 426
SatI GCNGC 2 cut(s) 71, 648
Sau3AI GATC 5 cut(s) 15, 283, 490, 773, 873
Sau96I GGNCC 2 cut(s) 367, 709
ScrFI CCNGG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 503, 690
SmoI CTYRAG 2 cut(s) 503, 690
Sse9I AATT 4 cut(s) 166, 225, 578, 810
SsiI CCGC 3 cut(s) 70, 370, 681
SspMI CTAG 2 cut(s) 287, 860
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 142, 232, 898
TaiI ACGT 2 cut(s) 186, 708
TaqI TCGA 4 cut(s) 18, 65, 333, 828
TasI AATT 4 cut(s) 166, 225, 578, 810
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 4 cut(s) 159, 188, 409, 856
Tru1I TTAA 2 cut(s) 390, 426
Tru9I TTAA 2 cut(s) 390, 426
TseI GCWGC 1 cut(s) 647
TspDTI ATGAA 4 cut(s) 252, 282, 294, 422
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 709
VspI ATTAAT 2 cut(s) 390, 426
XbaI TCTAGA 2 cut(s) 286, 859
XceI RCATGY 1 cut(s) 700
XspI CTAG 2 cut(s) 287, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.