Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022763.1

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

257 .. 577

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgggattaaagaaaataacagataaagaatcccttaaggtcacccactctaagaggcgcaaaggtctgtttcgcaaagccgatgacttttgctccaaaaccggtgctcaaatcgccattatcacattttcaccgggtatgaagccgatgacgtttggtcaaccttctgtagagtccatcatagatcgatatgagctctgcgaacaaagttcaaatgttgacgacaaagaaattcttgataaagatggtcatcatggggatggtgaagatttagatttaggagcaagacaagagaatagaagaggttggtatgaacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

6.83

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	231
AflII	CTTAAG	1 cut(s)	35
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	213
AhdI	GACNNNNNGTC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	2 cut(s)	109, 198
ApoI	RAATTY	1 cut(s)	231
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	34, 123, 275
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	109, 198
BccI	CCATC	3 cut(s)	185, 239, 254
BcnI	CCSGG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse118I	RCCGGY	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	187
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	249
BshTI	ACCGGT	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	109, 198
BsiSI	CCGG	2 cut(s)	102, 134
Bsp1286I	GDGCHC	2 cut(s)	109, 198
Bsp143I	GATC	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	3 cut(s)	80, 145, 196
CviKI_1	RGCY	3 cut(s)	80, 145, 196
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DriI	GACNNNNNGTC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	1 cut(s)	257
FaiI	YATR	5 cut(s)	140, 182, 192, 255, 312
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 219, 251
FatI	CATG	1 cut(s)	253
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	59
HapII	CCGG	2 cut(s)	102, 134
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	161, 220
HindII	GTYRAC	2 cut(s)	161, 220
HinfI	GANTC	2 cut(s)	29, 173
HpaII	CCGG	2 cut(s)	102, 134
HphI	GGTGA	3 cut(s)	34, 123, 275
Hpy166II	GTNNAC	2 cut(s)	161, 220
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	161, 220
HpyAV	CCTTC	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	98, 281
LpnPI	CCDG	2 cut(s)	115, 147
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	278, 312
MhlI	GDGCHC	2 cut(s)	109, 198
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	48, 296
MseI	TTAA	2 cut(s)	8, 36
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	2 cut(s)	102, 134
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	29
PinAI	ACCGGT	1 cut(s)	101
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	8, 36
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	109, 198
SetI	ASST	6 cut(s)	42, 67, 155, 166, 198, 307
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	7 cut(s)	114, 146, 147, 248, 266, 297, 302
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	8, 36
Tru9I	TTAA	2 cut(s)	8, 36
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.