Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

49619883 .. 49620424

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGACTAAAGAAGATCGAAATTAAGAAAATAACCGACAAGAATTCCCTCAAGGTCACCTACTCTAAGCGGCGAAAAGGTCTGTTTCGCAAAGCCGATGAGTTTTGCTCCAAGACTGGTGCTCAGATCGCCATTATCACCTTTTCTCCGGGTATGAAGCCAATGACATTCGGGAACCCTTCTGTAGAGTCCGTCATAAATCGATATGAGCTCTGCGAACAAAGTTCGAATGACAAAGAAATTCTTGATGAAGATCGTGATCTCCATGAGGTTGCTATGAGTGATGAGGAAAGGAAATGCTTGAAGGTGGGAGAAAAGATAGAGATAGAAGAGGCGAAGAGGAGAGAATCATGCACAAAGGACTTTTTGAGTAACTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

127

Amino Acids

14.61

Weight (kDa)

8.31

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.4e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	43, 240
AgsI	TTSAA	2 cut(s)	304, 379
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	2 cut(s)	124, 213
ApoI	RAATTY	2 cut(s)	43, 240
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	49, 130
AsuII	TTCGAA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	124, 213
BcnI	CCSGG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	252, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	2 cut(s)	252, 258
BseCI	ATCGAT	1 cut(s)	202
BseJI	GATNNNNATC	2 cut(s)	252, 258
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	355
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	124, 213
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	124, 213
Bsp143I	GATC	4 cut(s)	15, 126, 253, 259
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	15, 126, 253, 259
Bst6I	CTCTTC	2 cut(s)	324, 332
BstBI	TTCGAA	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	66, 123
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	4 cut(s)	18, 129, 256, 262
BstMBI	GATC	4 cut(s)	15, 126, 253, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	202
CviAII	CATG	2 cut(s)	266, 351
CviJI	RGCY	3 cut(s)	95, 160, 211
CviKI_1	RGCY	3 cut(s)	95, 160, 211
DdeI	CTNAG	2 cut(s)	66, 123
DpnI	GATC	4 cut(s)	17, 128, 255, 261
DpnII	GATC	4 cut(s)	15, 126, 253, 259
Eam1104I	CTCTTC	2 cut(s)	324, 332
EarI	CTCTTC	2 cut(s)	324, 332
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	2 cut(s)	269, 354
FaiI	YATR	6 cut(s)	155, 197, 207, 267, 278, 352
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	265, 350
Fnu4HI	GCNGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	269, 354
HinfI	GANTC	2 cut(s)	188, 347
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	49, 130
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	3 cut(s)	172, 245, 257
HpyAV	CCTTC	2 cut(s)	189, 298
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	66, 123
Hsp92II	CATG	2 cut(s)	269, 354
Kzo9I	GATC	4 cut(s)	15, 126, 253, 259
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	102, 162
MaeIII	GTNAC	2 cut(s)	55, 371
MalI	GATC	4 cut(s)	17, 128, 255, 261
MboI	GATC	4 cut(s)	15, 126, 253, 259
MboII	GAAGA	4 cut(s)	25, 263, 341, 349
MhlI	GDGCHC	2 cut(s)	124, 213
MluCI	AATT	4 cut(s)	21, 43, 240, 379
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	59, 262, 280, 325, 333
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	15, 126, 253, 259
NlaIII	CATG	2 cut(s)	269, 354
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	4 cut(s)	15, 126, 253, 259
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	124, 213
SetI	ASST	7 cut(s)	57, 62, 82, 143, 213, 273, 309
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	4 cut(s)	21, 43, 240, 379
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	148
TaqI	TCGA	3 cut(s)	18, 202, 227
TasI	AATT	4 cut(s)	21, 43, 240, 379
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	170, 264
TspGWI	ACGGA	1 cut(s)	181
XapI	RAATTY	2 cut(s)	43, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.