FvH4_6g03620

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000806
Physical Location & Seq
Reverse (-)
1985224 .. 1985721
498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03620.t1

Sequence Viewer

Length: 498 bp
ATGGGATTAAGGAGGACCGAAATGAAGAAAATAAGCAGCAAGAACGCCCTCAAGACCACCTTCACAAAGAGGCGACAAGGTCTGTTTCGCAAAGCCAACGAGTTTTGCACCAGAACTGGTGCCCAAATCGCCATTATCACCTTCTCACCCGCTGATAGACCGTTCACATTTGGTCACCCTTCAGAAGATTCCGTCATAGATCGTTATTATAATCCCGGCAAACAAGTACTCGAGGAGAATGGTGGTCATGGCAGTGTCATTGACGAGAAAGATGAAAACGTCAAGTTCTGGTCGGATAAACCCATTGAAGCCATGGGACTAGGCGAACTTAAGGAGCTTGCGCGATTGGTAGAAGATGAAATAGAAGAGACGAAGATGAGAGAAGCATGCACCAAAGACCTTTTGGGTTTAAACTGGAAAGGGGACGACCCGAAGTTAGATGATGAGATGAAAATAAGAGAATCACGCACAAAGGACTTCTTGGCTAACTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

6.2

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.3e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 1 cut(s) 343
AciI CCGC 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 228
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 130, 138, 167
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 320
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmcAI AGTACT 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 3 cut(s) 121, 419, 494
BseDI CCNNGG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 121, 419, 494
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 330, 437
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 330, 437
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 1 cut(s) 150
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 329
BsrI ACTGG 3 cut(s) 121, 419, 494
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 339, 388
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 173
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 390
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 339, 388
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 248, 313, 387
CviJI RGCY 4 cut(s) 95, 311, 337, 485
CviKI_1 RGCY 4 cut(s) 95, 311, 337, 485
CviQI GTAC 1 cut(s) 227
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DraI TTTAAA 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 3 cut(s) 251, 316, 390
FaiI YATR 6 cut(s) 197, 210, 249, 314, 388, 496
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 464, 496
FaqI GGGAC 2 cut(s) 330, 437
FatI CATG 3 cut(s) 247, 312, 386
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 37
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 251, 316, 390
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 2 cut(s) 188, 461
HpaII CCGG 1 cut(s) 216
HphI GGTGA 3 cut(s) 130, 138, 167
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 184, 295
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 3 cut(s) 70, 151, 189
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 108, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 3 cut(s) 251, 316, 390
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 102, 124, 229, 274, 400, 475
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 5 cut(s) 37, 197, 365, 377, 385
MhlI GDGCHC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 4 cut(s) 6, 59, 63, 226
MseI TTAA 3 cut(s) 8, 330, 410
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 216
MssI GTTTAAAC 1 cut(s) 411
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 312
NdeII GATC 1 cut(s) 199
NlaIII CATG 3 cut(s) 251, 316, 390
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 390
PaeI GCATGC 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 2 cut(s) 188, 461
PflFI GACNNNGTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 38
PmeI GTTTAAAC 1 cut(s) 411
PsiI TTATAA 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 15
PspXI VCTCGAGB 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 78
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 3 cut(s) 8, 330, 410
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 62, 82, 143, 282, 339, 402
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 15
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 3 cut(s) 50, 230, 329
SmoI CTYRAG 3 cut(s) 50, 230, 329
SphI GCATGC 1 cut(s) 390
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 231
TaqII GACCGA 1 cut(s) 32
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 188, 461
Tru1I TTAA 3 cut(s) 8, 330, 410
Tru9I TTAA 3 cut(s) 8, 330, 410
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 4 cut(s) 38, 288, 372, 464
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 390
XcmI CCANNNNNNNNNTGG 2 cut(s) 310, 400
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.