transcription regulatory region sequence-specific DNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 158, 189, 202 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 119 |
| AgsI | TTSAA | 1 cut(s) | 216 |
| AjnI | CCWGG | 1 cut(s) | 112 |
| AlwI | GGATC | 3 cut(s) | 158, 189, 202 |
| AoxI | GGCC | 1 cut(s) | 339 |
| ApeKI | GCWGC | 2 cut(s) | 4, 99 |
| AsuC2I | CCSGG | 1 cut(s) | 151 |
| AsuII | TTCGAA | 1 cut(s) | 318 |
| BamHI | GGATCC | 1 cut(s) | 194 |
| BauI | CACGAG | 1 cut(s) | 94 |
| BbvI | GCAGC | 2 cut(s) | 16, 111 |
| BccI | CCATC | 2 cut(s) | 68, 232 |
| BciT130I | CCWGG | 1 cut(s) | 114 |
| BcnI | CCSGG | 1 cut(s) | 151 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BfmI | CTRYAG | 1 cut(s) | 189 |
| BisI | GCNGC | 2 cut(s) | 5, 100 |
| BlsI | GCNGC | 2 cut(s) | 6, 101 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 151 |
| BmiI | GGNNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 2 cut(s) | 114, 151 |
| BpmI | CTGGAG | 1 cut(s) | 135 |
| Bpu10I | CCTNAGC | 1 cut(s) | 69 |
| Bpu14I | TTCGAA | 1 cut(s) | 318 |
| BpuMI | CCSGG | 1 cut(s) | 151 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 119 |
| BseBI | CCWGG | 1 cut(s) | 114 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseGI | GGATG | 4 cut(s) | 46, 79, 85, 274 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 119 |
| BseRI | GAGGAG | 3 cut(s) | 132, 135, 287 |
| BseXI | GCAGC | 2 cut(s) | 16, 111 |
| BshFI | GGCC | 1 cut(s) | 341 |
| BsiSI | CCGG | 2 cut(s) | 150, 263 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 119 |
| BsnI | GGCC | 1 cut(s) | 341 |
| Bsp119I | TTCGAA | 1 cut(s) | 318 |
| Bsp143I | GATC | 2 cut(s) | 163, 194 |
| BspANI | GGCC | 1 cut(s) | 341 |
| BspLI | GGNNCC | 1 cut(s) | 196 |
| BspPI | GGATC | 3 cut(s) | 158, 189, 202 |
| BspT104I | TTCGAA | 1 cut(s) | 318 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssMI | GATC | 2 cut(s) | 163, 194 |
| BssSI | CACGAG | 1 cut(s) | 94 |
| Bst2BI | CACGAG | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 1 cut(s) | 114 |
| BstBI | TTCGAA | 1 cut(s) | 318 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 117 |
| BstF5I | GGATG | 4 cut(s) | 46, 79, 85, 274 |
| BstKTI | GATC | 2 cut(s) | 166, 197 |
| BstMBI | GATC | 2 cut(s) | 163, 194 |
| BstNI | CCWGG | 1 cut(s) | 114 |
| BstSCI | CCNGG | 2 cut(s) | 112, 149 |
| BstSFI | CTRYAG | 1 cut(s) | 189 |
| BstV1I | GCAGC | 2 cut(s) | 16, 111 |
| BstX2I | RGATCY | 1 cut(s) | 194 |
| BstYI | RGATCY | 1 cut(s) | 194 |
| BsuRI | GGCC | 1 cut(s) | 341 |
| BtsCI | GGATG | 4 cut(s) | 46, 79, 85, 274 |
| CviAII | CATG | 1 cut(s) | 183 |
| CviJI | RGCY | 4 cut(s) | 7, 203, 262, 341 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 203, 262, 341 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DpnI | GATC | 2 cut(s) | 165, 196 |
| DpnII | GATC | 2 cut(s) | 163, 194 |
| Eco147I | AGGCCT | 1 cut(s) | 341 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 186 |
| FaiI | YATR | 5 cut(s) | 184, 191, 207, 209, 304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 47, 79 |
| FatI | CATG | 1 cut(s) | 182 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 100 |
| FokI | GGATG | 4 cut(s) | 53, 86, 92, 281 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 100 |
| FspBI | CTAG | 1 cut(s) | 11 |
| GluI | GCNGC | 2 cut(s) | 5, 100 |
| GsuI | CTGGAG | 1 cut(s) | 135 |
| HaeIII | GGCC | 1 cut(s) | 341 |
| HapII | CCGG | 2 cut(s) | 150, 263 |
| Hin1II | CATG | 1 cut(s) | 186 |
| HpaII | CCGG | 2 cut(s) | 150, 263 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 199 |
| Hpy188III | TCNNGA | 1 cut(s) | 94 |
| HpyAV | CCTTC | 2 cut(s) | 188, 306 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 186 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| Hsp92II | CATG | 1 cut(s) | 186 |
| Kzo9I | GATC | 2 cut(s) | 163, 194 |
| LmnI | GCTCC | 1 cut(s) | 274 |
| LpnPI | CCDG | 8 cut(s) | 17, 99, 115, 126, 163, 238, 276, 292 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 111 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MaeIII | GTNAC | 2 cut(s) | 91, 125 |
| MalI | GATC | 2 cut(s) | 165, 196 |
| MboI | GATC | 2 cut(s) | 163, 194 |
| MboII | GAAGA | 4 cut(s) | 295, 298, 301, 332 |
| MflI | RGATCY | 1 cut(s) | 194 |
| MluCI | AATT | 1 cut(s) | 323 |
| MspI | CCGG | 2 cut(s) | 150, 263 |
| MspR9I | CCNGG | 2 cut(s) | 114, 151 |
| MvaI | CCWGG | 1 cut(s) | 114 |
| NciI | CCSGG | 1 cut(s) | 151 |
| NdeII | GATC | 2 cut(s) | 163, 194 |
| NlaIII | CATG | 1 cut(s) | 186 |
| NlaIV | GGNNCC | 1 cut(s) | 196 |
| NmuCI | GTSAC | 1 cut(s) | 91 |
| NspV | TTCGAA | 1 cut(s) | 318 |
| PceI | AGGCCT | 1 cut(s) | 341 |
| PkrI | GCNGC | 2 cut(s) | 6, 101 |
| Psp6I | CCWGG | 1 cut(s) | 112 |
| PspGI | CCWGG | 1 cut(s) | 112 |
| PspN4I | GGNNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 194 |
| SatI | GCNGC | 2 cut(s) | 5, 100 |
| Sau3AI | GATC | 2 cut(s) | 163, 194 |
| ScrFI | CCNGG | 2 cut(s) | 114, 151 |
| SetI | ASST | 3 cut(s) | 115, 127, 317 |
| SfcI | CTRYAG | 1 cut(s) | 189 |
| SfuI | TTCGAA | 1 cut(s) | 318 |
| Sse9I | AATT | 1 cut(s) | 323 |
| SseBI | AGGCCT | 1 cut(s) | 341 |
| SspMI | CTAG | 1 cut(s) | 11 |
| StuI | AGGCCT | 1 cut(s) | 341 |
| StyD4I | CCNGG | 2 cut(s) | 112, 149 |
| TaqI | TCGA | 2 cut(s) | 236, 318 |
| TasI | AATT | 1 cut(s) | 323 |
| TseFI | GTSAC | 1 cut(s) | 91 |
| TseI | GCWGC | 2 cut(s) | 4, 99 |
| Tsp45I | GTSAC | 1 cut(s) | 91 |
| TspDTI | ATGAA | 1 cut(s) | 312 |
| TspGWI | ACGGA | 1 cut(s) | 345 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 117 |
| XspI | CTAG | 1 cut(s) | 11 |