Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Forward (+)

37701608 .. 37702491

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGCGAAGAAAGATCGAAATCAAGAAAATCAACAACAAAAACAAGGTTAAGGTCACATATACGAAGCGACGACAAGGTTTGTTTCGAAAAGCAGTTGAGCTTTGTGATATGTGTGGTGCCGAAATCGCCATTCTTACTATTTCACCCGGTGGAAAGTTCAGAAATTTTGGCCACCCTGACGTTGACTCCATCATAGCTCGGTATTGTGGTGATGCGACTTCAGTTACCGTCAATGAAAATCATGATTGTGTTAGTCACGAAGATGATGAAGAAGAAGAAGATGACGAAGAAGAAGATTTAGAAGGCGAGCAAGAGAGGGAATTAGAGGTTAGTACCTATAAGGTTGATGAGTCTATTGATATAGGCTCGATAGGCTCATCCCACAAGGTCGGCGAGGAGAAGGAGCTTATTAACCCTATCGAGGAGAAGGATCTCATTAGTCATATCAATAAAGAAAGAGATGGGAGGAGCCTAATGAAGTTTTCGTGGGATAAGGAGGAGCCTATTGATCCAAAACTACTTCGGATGTATTATCATAGCCTAACAGAATTGAGAAACAATATAGTTTGGGTGTTGAATGATAGGAACACGAGAGAATCATATGCTAAGGACTATATAAATATGATTGATATAAGTTATGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

217

Amino Acids

25.09

Weight (kDa)

4.87

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	441, 506
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	580
AluBI	AGCT	3 cut(s)	103, 200, 409
AluI	AGCT	3 cut(s)	103, 200, 409
AlwI	GGATC	2 cut(s)	441, 506
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	138, 224
AsuII	TTCGAA	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	119
BauI	CACGAG	1 cut(s)	592
BccI	CCATC	2 cut(s)	200, 458
BcnI	CCSGG	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	121, 473, 504
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	20
BseGI	GGATG	2 cut(s)	380, 534
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseRI	GAGGAG	4 cut(s)	413, 440, 484, 515
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	424
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	15, 433, 511
BspANI	GGCC	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	121, 473, 504
BspPI	GGATC	2 cut(s)	441, 506
BspT104I	TTCGAA	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	119
BssMI	GATC	3 cut(s)	15, 433, 511
BssSI	CACGAG	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	592
Bst4CI	ACNGT	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	380, 534
BstKTI	GATC	3 cut(s)	18, 436, 514
BstMBI	GATC	3 cut(s)	15, 433, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 375
BstSCI	CCNGG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	380, 534
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	9 cut(s)	103, 174, 200, 369, 378, 409, 474, 505, 543
CviKI_1	RGCY	9 cut(s)	103, 174, 200, 369, 378, 409, 474, 505, 543
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	17, 435, 513
DpnII	GATC	3 cut(s)	15, 433, 511
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	207
FaeI	CATG	1 cut(s)	248
FatI	CATG	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	604
FokI	GGATG	2 cut(s)	367, 541
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	188, 353, 599
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	138, 224
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	164, 528
Hpy188III	TCNNGA	3 cut(s)	25, 245, 260
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	299, 397, 424
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 375
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	15, 433, 511
LmnI	GCTCC	3 cut(s)	406, 471, 502
LpnPI	CCDG	2 cut(s)	163, 192
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	55, 226, 257
MalI	GATC	3 cut(s)	17, 435, 513
MboI	GATC	3 cut(s)	15, 433, 511
MboII	GAAGA	9 cut(s)	21, 275, 284, 287, 290, 293, 302, 305, 308
MflI	RGATCY	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	3 cut(s)	166, 323, 551
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	182, 362
MnlI	CCTC	6 cut(s)	312, 322, 391, 418, 462, 493
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	51, 414
MslI	CAYNNNNRTG	2 cut(s)	249, 264
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	128, 375
NciI	CCSGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	3 cut(s)	15, 433, 511
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	3 cut(s)	121, 473, 504
NmuCI	GTSAC	2 cut(s)	55, 257
NspV	TTCGAA	1 cut(s)	88
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	599
PleI	GAGTC	2 cut(s)	182, 361
PpsI	GAGTC	2 cut(s)	182, 361
PspN4I	GGNNCC	3 cut(s)	121, 473, 504
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	249, 264
SaqAI	TTAA	2 cut(s)	51, 414
Sau3AI	GATC	3 cut(s)	15, 433, 511
SchI	GAGTC	2 cut(s)	182, 362
ScrFI	CCNGG	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	249, 264
Sse9I	AATT	3 cut(s)	166, 323, 551
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	4 cut(s)	18, 88, 371, 423
TasI	AATT	3 cut(s)	166, 323, 551
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	2 cut(s)	51, 414
Tru9I	TTAA	2 cut(s)	51, 414
TseFI	GTSAC	2 cut(s)	55, 257
Tsp45I	GTSAC	2 cut(s)	55, 257
TspDTI	ATGAA	3 cut(s)	252, 285, 494
XapI	RAATTY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.