RLG00000019068
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000806
Physical Location & Seq
Forward (+)
45890241 .. 45893227
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019068

Sequence Viewer

Length: 774 bp
ATGGGACGCAGGAAGATAGAAATCGAGAAAATCAGTAACAAGAACTACCTAATGGCCACATTCTCTAAGCGGCGAAAGGGTCTGTTTCACAAAGCCAGTGAGTTTTGCAGGTTATCCGGTGCCGAAATCGCCATCATTGTCTTTTCGCCAGGTGACCGTGTTTACCGGTTTGGTCACCCTTCAGCAGACTCCATCATTGATCGGTATGATGATCCGCGAACTGAAAATAACAATAATAAGGACACACGAGAGTTTCCGTATACACTTGACGACGAAGACAATGAAGCCCATGATGATGATTTGGCGGGCGGCGAGCTTGGAAAAGAGGCAGCTGATGGTAAGGATGAGCTTGGAAAGGCCAGGTTTTGGTGGGATAATCTGCCTATTGAAGATATGGGACTAAAACAACTTGAGCAATATAAAAGTTGCTTAGAAGTTATAAGAAACGAGCTGGCATATGAATTACATGAGACGAAGAGAAGAGAATCACACACCAAAGATTTTTTGAGTTTGATTGGCTTCAGTACTCGTACTTCTACTTCTGATCCACTGGCAGACCAAGTGACCAAGGCGATAGACGAGGACAGCTCGTCGAAGCAGGACTGCGCGGAGGTGAAATCGAAGACGGAGAAGCTGGCGGGTCTGCTACAACGGAGTAGTTCCGGAAAATGTCGTCGCAGCTCGAGAATTAGATCGGCGATGTGTCATGGCCGCTCAGAGTCTTGGCTCCGATGGATATCCGGGAAGATGGATACTTGGGCCTACCGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

258

Amino Acids

29.5

Weight (kDa)

6.62

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 5.1e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
DUF7792 PF25055 184 - 218 5.9e-07 Domain of unknown function (DUF7792)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 260
AccII CGCG 2 cut(s) 217, 608
AccIII TCCGGA 1 cut(s) 662
AciI CCGC 8 cut(s) 70, 215, 305, 309, 608, 638, 712, 766
AclWI GGATC 2 cut(s) 206, 539
AcoI YGGCCR 2 cut(s) 54, 709
AcuI CTGAAG 2 cut(s) 165, 505
AfaI GTAC 2 cut(s) 526, 532
AfiI CCNNNNNNNGG 1 cut(s) 366
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 389
AhdI GACNNNNNGTC 1 cut(s) 589
AjnI CCWGG 2 cut(s) 148, 359
AluBI AGCT 7 cut(s) 316, 332, 349, 451, 588, 634, 681
AluI AGCT 7 cut(s) 316, 332, 349, 451, 588, 634, 681
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 206, 539
Ama87I CYCGRG 1 cut(s) 682
Aor13HI TCCGGA 1 cut(s) 662
AoxI GGCC 4 cut(s) 54, 357, 709, 759
ApeKI GCWGC 2 cut(s) 329, 678
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 759
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 3 cut(s) 164, 167, 625
AvaI CYCGRG 1 cut(s) 682
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 119
BarI GAAGNNNNNNTAC 4 cut(s) 517, 523, 549, 555
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 282, 629
BbvI GCAGC 2 cut(s) 341, 690
BccI CCATC 5 cut(s) 140, 200, 329, 726, 742
BciT130I CCWGG 2 cut(s) 150, 361
BciVI GTATCC 1 cut(s) 745
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 99
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 5 cut(s) 71, 310, 330, 679, 712
BlsI GCNGC 5 cut(s) 72, 311, 331, 680, 713
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 3 cut(s) 150, 361, 742
BmeRI GACNNNNNGTC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 121, 728
BmrFI CCNGG 3 cut(s) 150, 361, 742
BpiI GAAGAC 2 cut(s) 282, 629
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 742
BsaBI GATNNNNATC 2 cut(s) 20, 736
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 3 cut(s) 116, 165, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 96, 555
Bse8I GATNNNNATC 2 cut(s) 20, 736
BseAI TCCGGA 1 cut(s) 662
BseBI CCWGG 2 cut(s) 150, 361
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 2 cut(s) 20, 736
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 2 cut(s) 96, 555
BseXI GCAGC 2 cut(s) 341, 690
Bsh1236I CGCG 2 cut(s) 217, 608
BshFI GGCC 4 cut(s) 56, 359, 711, 761
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 4 cut(s) 117, 166, 663, 741
BslFI GGGAC 2 cut(s) 18, 411
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 464
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 18, 411
BsnI GGCC 4 cut(s) 56, 359, 711, 761
BsoBI CYCGRG 1 cut(s) 682
Bsp13I TCCGGA 1 cut(s) 662
Bsp143I GATC 4 cut(s) 199, 211, 544, 692
BspACI CCGC 8 cut(s) 70, 215, 305, 309, 608, 638, 712, 766
BspANI GGCC 4 cut(s) 56, 359, 711, 761
BspCNI CTCAG 1 cut(s) 728
BspEI TCCGGA 1 cut(s) 662
BspFNI CGCG 2 cut(s) 217, 608
BspLI GGNNCC 2 cut(s) 121, 728
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 206, 539
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 2 cut(s) 96, 555
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 4 cut(s) 199, 211, 544, 692
BssNAI GTATAC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 567
Bst1107I GTATAC 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 150, 361
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 470, 475
BstC8I GCNNGC 4 cut(s) 307, 314, 453, 636
BstDEI CTNAG 3 cut(s) 66, 430, 715
BstEII GGTNACC 2 cut(s) 152, 173
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 217, 608
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 4 cut(s) 202, 214, 547, 695
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 4 cut(s) 199, 211, 544, 692
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 150, 361
BstPI GGTNACC 2 cut(s) 152, 173
BstSCI CCNGG 3 cut(s) 148, 359, 740
BstUI CGCG 2 cut(s) 217, 608
BstV1I GCAGC 2 cut(s) 341, 690
BstV2I GAAGAC 2 cut(s) 282, 629
BstZ17I GTATAC 1 cut(s) 261
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 4 cut(s) 56, 359, 711, 761
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 103, 548
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 307, 314, 453, 636
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 759
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 525, 531
CspAI ACCGGT 1 cut(s) 165
CviAII CATG 3 cut(s) 290, 467, 707
CviQI GTAC 2 cut(s) 525, 531
DdeI CTNAG 3 cut(s) 66, 430, 715
DpnI GATC 4 cut(s) 201, 213, 546, 694
DpnII GATC 4 cut(s) 199, 211, 544, 692
DriI GACNNNNNGTC 1 cut(s) 589
EaeI YGGCCR 2 cut(s) 54, 709
Eam1104I CTCTTC 2 cut(s) 470, 475
Eam1105I GACNNNNNGTC 1 cut(s) 589
EarI CTCTTC 2 cut(s) 470, 475
Eco130I CCWWGG 1 cut(s) 567
Eco32I GATATC 1 cut(s) 738
Eco57I CTGAAG 2 cut(s) 165, 505
Eco88I CYCGRG 1 cut(s) 682
Eco91I GGTNACC 2 cut(s) 152, 173
EcoO65I GGTNACC 2 cut(s) 152, 173
EcoRII CCWGG 2 cut(s) 148, 359
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 3 cut(s) 293, 470, 710
FaqI GGGAC 2 cut(s) 18, 411
FatI CATG 3 cut(s) 289, 466, 706
FauI CCCGC 2 cut(s) 298, 631
FauNDI CATATG 1 cut(s) 457
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 5 cut(s) 71, 310, 330, 679, 712
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 71, 310, 330, 679, 712
GlaI GCGC 1 cut(s) 607
GluI GCNGC 5 cut(s) 71, 310, 330, 679, 712
HaeIII GGCC 4 cut(s) 56, 359, 711, 761
HapII CCGG 4 cut(s) 117, 166, 663, 741
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 608
Hin1II CATG 3 cut(s) 293, 470, 710
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HinfI GANTC 3 cut(s) 188, 485, 719
HpaII CCGG 4 cut(s) 117, 166, 663, 741
HphI GGTGA 3 cut(s) 164, 167, 625
Hpy166II GTNNAC 2 cut(s) 163, 261
Hpy188I TCNGA 3 cut(s) 544, 718, 731
Hpy188III TCNNGA 3 cut(s) 25, 663, 684
Hpy8I GTNNAC 2 cut(s) 163, 261
Hpy99I CGWCG 3 cut(s) 275, 595, 678
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 66, 430, 715
Hsp92II CATG 3 cut(s) 293, 470, 710
HspAI GCGC 1 cut(s) 606
Kpn2I TCCGGA 1 cut(s) 662
Kzo9I GATC 4 cut(s) 199, 211, 544, 692
LmnI GCTCC 1 cut(s) 732
Lsp1109I GCAGC 2 cut(s) 341, 690
MaeIII GTNAC 4 cut(s) 35, 152, 173, 562
MalI GATC 4 cut(s) 201, 213, 546, 694
MbiI CCGCTC 1 cut(s) 714
MboI GATC 4 cut(s) 199, 211, 544, 692
MboII GAAGA 7 cut(s) 25, 287, 401, 487, 492, 634, 757
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 461, 687
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 2 cut(s) 182, 728
MnlI CCTC 3 cut(s) 319, 574, 604
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 117, 166, 663, 741
MspR9I CCNGG 3 cut(s) 150, 361, 742
MvaI CCWGG 2 cut(s) 150, 361
MvnI CGCG 2 cut(s) 217, 608
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 742
NdeI CATATG 1 cut(s) 457
NdeII GATC 4 cut(s) 199, 211, 544, 692
NlaIII CATG 3 cut(s) 293, 470, 710
NlaIV GGNNCC 2 cut(s) 121, 728
NmuCI GTSAC 3 cut(s) 152, 173, 562
PaeR7I CTCGAG 1 cut(s) 682
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 740
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 5 cut(s) 72, 311, 331, 680, 713
PleI GAGTC 2 cut(s) 182, 727
PpsI GAGTC 2 cut(s) 182, 727
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 148, 359
PspEI GGTNACC 2 cut(s) 152, 173
PspGI CCWGG 2 cut(s) 148, 359
PspN4I GGNNCC 2 cut(s) 121, 728
PspPI GGNCC 1 cut(s) 759
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 526, 532
RsaNI GTAC 2 cut(s) 525, 531
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 5 cut(s) 71, 310, 330, 679, 712
Sau3AI GATC 4 cut(s) 199, 211, 544, 692
Sau96I GGNCC 1 cut(s) 759
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 2 cut(s) 182, 728
ScrFI CCNGG 3 cut(s) 150, 361, 742
Sfr274I CTCGAG 1 cut(s) 682
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 410, 682
SmoI CTYRAG 2 cut(s) 410, 682
Sse9I AATT 2 cut(s) 461, 687
SsiI CCGC 8 cut(s) 70, 215, 305, 309, 608, 638, 712, 766
StyD4I CCNGG 3 cut(s) 148, 359, 740
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 4 cut(s) 24, 593, 620, 683
TasI AATT 2 cut(s) 461, 687
TatI WGTACW 1 cut(s) 524
TauI GCSGC 3 cut(s) 73, 312, 714
TfiI GAWTC 1 cut(s) 485
TscAI CASTG 2 cut(s) 103, 555
TseFI GTSAC 3 cut(s) 152, 173, 562
TseI GCWGC 2 cut(s) 329, 678
Tsp45I GTSAC 3 cut(s) 152, 173, 562
TspDTI ATGAA 2 cut(s) 297, 474
TspGWI ACGGA 3 cut(s) 246, 641, 667
TspRI CASTG 2 cut(s) 103, 555
Van91I CCANNNNNTGG 1 cut(s) 366
XhoI CTCGAG 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.