Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

1990744 .. 1991304

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGTCGGAAGAAAATTGAAATCAAGAAAATTACCAATAGGAATGCCCTCAAGGTCACCTGCACTAAGCGGCGTACAGGTCTGATTCGCAAAGCCAAAGACTTTTGCGCCAAAACTGGTGCTCAAATCGCCATTATCACCTTTTCTCCTGGTATGCAGCCGAAGACATTCGGCAACCCTTCTGTAGAGTCTGTCATAGATCGATACGAGCTCTACGAAAAGAAAAGTTCGAATGACAAAGAAATGCTTGATGAAGATCGTGGTCTTCGTGAGGTTGGTTTGAGTGACGAGGAAAACGAAATGCTTGAAGGTATGACACTGAATGAGCTGAAGCAATATGCGCGTAGCATAGAAGAGCAAACAAACAAGTTTCGCATGGCTTGGCAAATCCAAGACAGGAAGAGGAGAGAATCGAGCACCGTCGACTTGTTTGAAAAGAATGCTTGTGGGGATTTGACGATCTTTGGCGTCAAGGTGGGAGAAAAGAATCAAAAGATGGAGACAGAAGACATGAAAAGGAGAGAATCATGCACAAAGGACTTCTTGAGTACCTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

187

Amino Acids

21.54

Weight (kDa)

9.1

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.7e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	343
AciI	CCGC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	76, 550
AgsI	TTSAA	4 cut(s)	20, 308, 434, 556
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	211, 328
AluI	AGCT	2 cut(s)	211, 328
Alw21I	GWGCWC	3 cut(s)	124, 213, 419
Alw26I	GTCTC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	110, 343
AsuHPI	GGTGA	2 cut(s)	49, 130
AsuII	TTCGAA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	3 cut(s)	170, 257, 513
Bbv12I	GWGCWC	3 cut(s)	124, 213, 419
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	71, 158
BlsI	GCNGC	2 cut(s)	72, 159
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
BpiI	GAAGAC	3 cut(s)	170, 257, 513
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	3 cut(s)	124, 213, 419
BsmAI	GTCTC	1 cut(s)	494
BsmI	GAATGC	2 cut(s)	49, 445
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	124, 213, 419
Bsp143I	GATC	3 cut(s)	199, 256, 459
BspACI	CCGC	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	199, 256, 459
BssNI	GRCGYC	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	348, 395
BstACI	GRCGYC	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	2 cut(s)	110, 343
BstKTI	GATC	3 cut(s)	202, 259, 462
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	199, 256, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 340
BstNI	CCWGG	1 cut(s)	150
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	3 cut(s)	170, 257, 513
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	68
CfoI	GCGC	2 cut(s)	110, 343
ClaI	ATCGAT	1 cut(s)	202
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	75, 549
CviAII	CATG	3 cut(s)	376, 511, 528
CviJI	RGCY	5 cut(s)	95, 160, 211, 328, 380
CviKI_1	RGCY	5 cut(s)	95, 160, 211, 328, 380
CviQI	GTAC	2 cut(s)	75, 549
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	3 cut(s)	201, 258, 461
DpnII	GATC	3 cut(s)	199, 256, 459
Eam1104I	CTCTTC	2 cut(s)	348, 395
EarI	CTCTTC	2 cut(s)	348, 395
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	3 cut(s)	379, 514, 531
FaiI	YATR	8 cut(s)	155, 197, 314, 339, 350, 377, 512, 529
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 527, 559
FatI	CATG	3 cut(s)	375, 510, 527
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	71, 158
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	71, 158
GlaI	GCGC	2 cut(s)	109, 342
GluI	GCNGC	2 cut(s)	71, 158
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	110, 343
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	379, 514, 531
Hin6I	GCGC	2 cut(s)	108, 341
HinP1I	GCGC	2 cut(s)	108, 341
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	85, 188, 410, 487, 524
HphI	GGTGA	2 cut(s)	49, 130
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	9, 84
Hpy188III	TCNNGA	3 cut(s)	25, 269, 544
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	189, 302
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	63, 157, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 340
HpyF3I	CTNAG	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	379, 514, 531
HspAI	GCGC	2 cut(s)	108, 341
Kzo9I	GATC	3 cut(s)	199, 256, 459
LguI	GCTCTTC	1 cut(s)	348
LpnPI	CCDG	6 cut(s)	63, 73, 102, 135, 162, 382
Lsp1109I	GCAGC	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	55, 284
MalI	GATC	3 cut(s)	201, 258, 461
MboI	GATC	3 cut(s)	199, 256, 459
MboII	GAAGA	7 cut(s)	22, 175, 257, 266, 365, 412, 518
MhlI	GDGCHC	3 cut(s)	124, 213, 419
MluCI	AATT	3 cut(s)	15, 30, 556
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	59, 265, 283, 396
MroXI	GAANNNNTTC	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	2 cut(s)	49, 445
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	128, 340
NdeII	GATC	3 cut(s)	199, 256, 459
NlaIII	CATG	3 cut(s)	379, 514, 531
NmuCI	GTSAC	2 cut(s)	55, 284
NspV	TTCGAA	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	3 cut(s)	213, 265, 294
PctI	GAATGC	2 cut(s)	49, 445
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	85, 410, 487, 524
PkrI	GCNGC	2 cut(s)	72, 159
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	148
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	76, 550
RsaNI	GTAC	2 cut(s)	75, 549
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	348
SatI	GCNGC	2 cut(s)	71, 158
Sau3AI	GATC	3 cut(s)	199, 256, 459
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	3 cut(s)	124, 213, 419
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	50, 544
SmoI	CTYRAG	2 cut(s)	50, 544
Sse9I	AATT	3 cut(s)	15, 30, 556
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	202, 230, 413, 423
TasI	AATT	3 cut(s)	15, 30, 556
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	4 cut(s)	85, 410, 487, 524
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	55, 284
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	2 cut(s)	55, 284
TspDTI	ATGAA	2 cut(s)	267, 527
TspRI	CASTG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.