Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Forward (+)

9279129 .. 9279972

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGAAAAGGAAGATCGACATCAAGAAAATAAACAACAAGAACTACCTAAAGGCCACTTTCTCAAAGCGGCGCAAGGGACTCTTCCGCAAAGCCACTGACCTTTGCTGCTTGTCTGGTGCCCAGATTGCGATTATCACCTTTTCGCCTGGTAACAAGGCCTTCATCTTTGGACAACCCTCCGCGGAAACTGTCATTGATCGATTTCTTGGCGAACAAGCTTCATGTACAACGGCTGATCATGATGATGAGGGCATTGGACCCGTTGAGGGTGAGGATGGTCATGAAGATTTAGAAGCCAATCATGATGAAGAGGATATTGGATCCGTTGATGCTGAGGATAGCCATGAAGATTCAGAAGCCCATCAAGAAGAAGAGAAAGAAGATGAGGCTGGTGGCGGTGGGGATGGAGAAAAGGTCAGTGTATGGTGGGATGAGCCTATTGATGAAAATTTAGGACTACATGAACTTAAAAAGTACAAGGGTTTGCTAGAATGTTTGAAAGAGAATGTGGCTAGTAAGTTAGATGAGAGGAATAAAAGAGAATTTTACACCAAGGATTATTTGGCTATGCTTAATTCAGAGATCGGTTCTACTTCTACTACTTGCCAAGAAAGAGATCTATGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

211

Amino Acids

23.41

Weight (kDa)

4.64

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	185
AciI	CCGC	5 cut(s)	70, 88, 183, 185, 399
AclWI	GGATC	2 cut(s)	318, 331
AcsI	RAATTY	2 cut(s)	451, 545
AfaI	GTAC	2 cut(s)	229, 479
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AlwI	GGATC	2 cut(s)	318, 331
AoxI	GGCC	2 cut(s)	54, 159
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	451, 545
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	130, 284
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	3 cut(s)	272, 372, 401
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	238
BfaI	CTAG	2 cut(s)	491, 516
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	71, 109
BlsI	GCNGC	2 cut(s)	72, 110
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	121, 262, 325
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	183, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	183, 555
BseGI	GGATG	3 cut(s)	283, 412, 439
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	56, 161
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	56, 161
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
BspACI	CCGC	5 cut(s)	70, 88, 183, 185, 399
BspANI	GGCC	2 cut(s)	56, 161
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	3 cut(s)	241, 283, 304
BspLI	GGNNCC	3 cut(s)	121, 262, 325
BspPI	GGATC	2 cut(s)	318, 331
BspT107I	GGYRCC	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	183, 555
BssMI	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	3 cut(s)	89, 306, 369
BstAUI	TGTACA	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	283, 412, 439
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	18, 202, 241, 326, 588, 622
BstMBI	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	323, 619
BstYI	RGATCY	2 cut(s)	323, 619
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	56, 161
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	283, 412, 439
BtsIMutI	CAGTG	2 cut(s)	96, 427
CciI	TCATGA	3 cut(s)	241, 283, 304
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	260
Cfr42I	CCGCGG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	228, 478
CviAII	CATG	6 cut(s)	225, 242, 284, 305, 347, 464
CviQI	GTAC	2 cut(s)	228, 478
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	6 cut(s)	17, 201, 240, 325, 587, 621
DpnII	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
Eam1104I	CTCTTC	3 cut(s)	89, 306, 369
EarI	CTCTTC	3 cut(s)	89, 306, 369
Eco130I	CCWWGG	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	6 cut(s)	228, 245, 287, 308, 350, 467
FaiI	YATR	9 cut(s)	226, 243, 285, 306, 348, 427, 465, 572, 625
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	6 cut(s)	224, 241, 283, 304, 346, 463
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	71, 109
FokI	GGATG	3 cut(s)	290, 419, 446
Fsp4HI	GCNGC	2 cut(s)	71, 109
FspBI	CTAG	2 cut(s)	491, 516
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	71, 109
HaeIII	GGCC	2 cut(s)	56, 161
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	6 cut(s)	228, 245, 287, 308, 350, 467
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	81, 353
HphI	GGTGA	2 cut(s)	130, 284
Hpy188I	TCNGA	2 cut(s)	358, 583
Hpy188III	TCNNGA	5 cut(s)	25, 242, 284, 305, 368
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	6 cut(s)	228, 245, 287, 308, 350, 467
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
LpnPI	CCDG	5 cut(s)	102, 135, 137, 162, 378
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	491, 516
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	6 cut(s)	17, 201, 240, 325, 587, 621
MboI	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
MboII	GAAGA	8 cut(s)	25, 76, 299, 323, 362, 383, 386, 395
MflI	RGATCY	2 cut(s)	323, 619
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	451, 545, 577
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	190, 244, 262, 268, 307, 331, 382, 525
MseI	TTAA	2 cut(s)	471, 576
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
NlaIII	CATG	6 cut(s)	228, 245, 287, 308, 350, 467
NlaIV	GGNNCC	3 cut(s)	121, 262, 325
PagI	TCATGA	3 cut(s)	241, 283, 304
PceI	AGGCCT	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	72, 110
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	121, 262, 325
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	323, 619
RsaI	GTAC	2 cut(s)	229, 479
RsaNI	GTAC	2 cut(s)	228, 478
RseI	CAYNNNNRTG	1 cut(s)	246
SacII	CCGCGG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	471, 576
SatI	GCNGC	2 cut(s)	71, 109
Sau3AI	GATC	6 cut(s)	15, 199, 238, 323, 585, 619
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	5 cut(s)	51, 105, 143, 223, 420
SfaNI	GCATC	1 cut(s)	322
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	451, 545, 577
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	5 cut(s)	70, 88, 183, 185, 399
SspMI	CTAG	2 cut(s)	491, 516
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	18, 202
TasI	AATT	3 cut(s)	451, 545, 577
TatI	WGTACW	2 cut(s)	227, 477
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	471, 576
Tru9I	TTAA	2 cut(s)	471, 576
TscAI	CASTG	2 cut(s)	103, 427
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	7 cut(s)	154, 213, 300, 324, 363, 462, 480
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	103, 427
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	451, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	491, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.