Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2738103 .. 2738654

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGATTAAAGAAGATTGAAATCAAGAAAATAACAGATAAAGAATCCCTTAAGGTCACCTACTCTAAGAGGCGCAAAGGTCTGTTTCGCAAAGCCGATGACTTTTGCTCCAAAACCGGTGCTCAAATCGCCATTATCACATTTTCACCGGGTATGAAGCCGATGACGTTTGGTCAACCTTCTGTAGAGTCCATCATAGATCGATATGAGCTCTGCGAACAAAGTTCAAATGTTGACGACAAAGAAATTCTTGATAAAGATGGTCATCATGGGGATGGTGAAGATTTAGATTTAGGAGCAAGACAAGAGAGAATAGAAGAGGTTGGTATGAACGATGAGGAAAAGGAATTACTTGAAGTTGAAGGTGTGGGACTGGATGAGCTCAAGCAATATGCGACTAGGGTAGAAGAGCAAAGGAACAAGTTGGCTTGGCAAATCGAAGAAAGGAGGAGGAGAGAATCGAGCACCATTGACTTGTTAGGAGTGAATTGCTGGAGTACTTCTGACGATTTGAAGCTTTTTGGTATAAAGGTCGAGAAAAGATGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

183

Amino Acids

21.04

Weight (kDa)

5.21

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.3e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	1 cut(s)	499
AflII	CTTAAG	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	20, 228, 356, 362, 514
AhdI	GACNNNNNGTC	1 cut(s)	171
AluBI	AGCT	4 cut(s)	211, 382, 517, 549
AluI	AGCT	4 cut(s)	211, 382, 517, 549
Alw21I	GWGCWC	4 cut(s)	124, 213, 384, 467
ApoI	RAATTY	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	49, 138, 290
BanII	GRGCYC	2 cut(s)	213, 384
Bbv12I	GWGCWC	4 cut(s)	124, 213, 384, 467
BccI	CCATC	4 cut(s)	200, 254, 269, 537
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	2 cut(s)	399, 550
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	20, 264
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	20, 264
BseCI	ATCGAT	1 cut(s)	202
BseGI	GGATG	2 cut(s)	280, 382
BseJI	GATNNNNATC	2 cut(s)	20, 264
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	2 cut(s)	463, 466
BshTI	ACCGGT	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	4 cut(s)	124, 213, 384, 467
BsiSI	CCGG	2 cut(s)	117, 149
BslFI	GGGAC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	384
Bsp1286I	GDGCHC	4 cut(s)	124, 213, 384, 467
Bsp143I	GATC	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	312, 402
BstAFI	CTTAAG	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	280, 382
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	280, 382
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	498
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	7 cut(s)	95, 160, 211, 382, 428, 517, 549
CviKI_1	RGCY	7 cut(s)	95, 160, 211, 382, 428, 517, 549
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	312, 402
Eam1105I	GACNNNNNGTC	1 cut(s)	171
EarI	CTCTTC	2 cut(s)	312, 402
Ecl136II	GAGCTC	2 cut(s)	211, 382
Eco24I	GRGCYC	2 cut(s)	213, 384
Eco53kI	GAGCTC	2 cut(s)	211, 382
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	211, 382
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	213, 384
FaeI	CATG	1 cut(s)	272
FaiI	YATR	7 cut(s)	155, 197, 207, 270, 329, 393, 527
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 234, 266
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	1 cut(s)	268
FokI	GGATG	2 cut(s)	287, 389
FriOI	GRGCYC	2 cut(s)	213, 384
FspBI	CTAG	2 cut(s)	399, 550
GlaI	GCGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	514
HapII	CCGG	2 cut(s)	117, 149
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	176, 235
HindII	GTYRAC	2 cut(s)	176, 235
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	3 cut(s)	44, 188, 458
HpaII	CCGG	2 cut(s)	117, 149
HphI	GGTGA	3 cut(s)	49, 138, 290
Hpy166II	GTNNAC	2 cut(s)	176, 235
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	25, 251, 535
Hpy8I	GTNNAC	2 cut(s)	176, 235
HpyAV	CCTTC	2 cut(s)	189, 356
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	3 cut(s)	113, 296, 546
LpnPI	CCDG	4 cut(s)	130, 162, 359, 478
MaeI	CTAG	2 cut(s)	399, 550
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	5 cut(s)	25, 293, 329, 419, 452
MhlI	GDGCHC	4 cut(s)	124, 213, 384, 467
MluCI	AATT	3 cut(s)	246, 347, 487
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	63, 313, 331, 441, 444
MseI	TTAA	2 cut(s)	8, 51
MslI	CAYNNNNRTG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	117, 149
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	44, 458
PinAI	ACCGGT	1 cut(s)	116
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	2 cut(s)	213, 384
PspEI	GGTNACC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	2 cut(s)	213, 384
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	8, 51
Sau3AI	GATC	1 cut(s)	199
ScaI	AGTACT	1 cut(s)	499
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	124, 213, 384, 467
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	50, 383
SmoI	CTYRAG	2 cut(s)	50, 383
Sse9I	AATT	3 cut(s)	246, 347, 487
SspMI	CTAG	2 cut(s)	399, 550
SstI	GAGCTC	2 cut(s)	213, 384
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	202, 438, 461, 534
TasI	AATT	3 cut(s)	246, 347, 487
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	44, 458
Tru1I	TTAA	2 cut(s)	8, 51
Tru9I	TTAA	2 cut(s)	8, 51
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	170, 344
Vha464I	CTTAAG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	2 cut(s)	399, 550
ZrmI	AGTACT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.