Rh7AG486600

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000806
Physical Location & Seq
Forward (+)
68658853 .. 68687660
28808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG486600.1

Sequence Viewer

Length: 255 bp
ATGGCCCACTCCTCTCCAAGTCCCTCTTCAATCAGATGGTCTCACTTCGACTTTAGTGGTCCAACTTCTGGGAGCTCAGCTTGTGTTGCAATTATTAGAAACAACCAACTTGTTGTTGCCAATGCTGGTGATTCTCGTTGTGTCATATTGAGGAAGGGTCAGGTTAGTGGCTCCTACTCAGCCTATACTGTGTCCGCCATTGAATCTAACCACTCTTTGGATGAGATTCTAATGATTCCTCGACCAAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

84

Amino Acids

8.96

Weight (kDa)

8.8

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 21 - 55 1.4e-09 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 68, 217
AciI CCGC 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 68, 217
AgsI TTSAA 2 cut(s) 30, 203
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 2 cut(s) 75, 80
AluI AGCT 2 cut(s) 75, 80
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 2 cut(s) 4, 59
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 45
BlpI GCTNAGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 4, 59
BmiI GGNNCC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 217
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 68, 217
BseMII CTCAG 2 cut(s) 90, 192
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 68, 217
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 76
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 89, 191
BspLI GGNNCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 76, 178
BstF5I GGATG 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 4, 59
CviJI RGCY 5 cut(s) 5, 75, 80, 171, 182
CviKI_1 RGCY 5 cut(s) 5, 75, 80, 171, 182
DdeI CTNAG 2 cut(s) 76, 178
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 77
FaiI YATR 2 cut(s) 146, 186
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 6
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 4 cut(s) 131, 203, 226, 235
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 76, 178
LmnI GCTCC 2 cut(s) 72, 176
LpnPI CCDG 3 cut(s) 54, 111, 146
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 90, 250
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 4 cut(s) 22, 34, 144, 249
MseI TTAA 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 172
PfeI GAWTC 4 cut(s) 131, 203, 226, 235
PflMI CCANNNNNTGG 2 cut(s) 68, 217
Psp124BI GAGCTC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 4, 59
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 4, 59
SduI GDGCHC 1 cut(s) 77
SetI ASST 3 cut(s) 77, 82, 165
SgeI CNNG 7 cut(s) 30, 81, 93, 122, 138, 147, 173
SinI GGWCC 1 cut(s) 59
Sse9I AATT 2 cut(s) 90, 250
SsiI CCGC 1 cut(s) 195
SstI GAGCTC 1 cut(s) 77
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 48, 241
TasI AATT 2 cut(s) 90, 250
TfiI GAWTC 4 cut(s) 131, 203, 226, 235
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
Van91I CCANNNNNTGG 2 cut(s) 68, 217
VpaK11BI GGWCC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.