Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2750568 .. 2751170

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGATTAAAGAAGATTGAAATCAAGAAAATAACAGATAAAGAATCCCTTAAGGTCACCTACTCTAAGAGGCGCAAAGGTCTGTTTCGCAAAGCCGATGACTTTTGCTCCAAAACCGGTGCTCAAATCGCCATTATCACATTTTCACCGGGTATGAAGCCGATGACGTTTGGTCAACCTTCTGTAGAGTCCATCATAGATCGATATGAGCTCTGCGAACAAAGTTCGAATGTTGACGACAAAGAAATTCTTGATAAAGATGGTCATCATGGGGATGGTGAAGATTTAGATTTAGGAGCAAGACAAGAGAGAATAGAAGAGGTTGGTATGAACGATGAGGAAAAGGAATTACTTGAAGTTGAAGGTGTGGGACTGGATGAGCTCAAGGAGGTAGAAGAGCAAAGGAACAAGTTGGCTTGGCAAATCGAAGAAAGGAGGAGGAGAGAATCGAGCACCATCGACTTGTTAGGAGTGAATTGCTGGAGTACTTCTGAAGATTTGAAGCTTTTTGGTATAAAGGTGGGAGAAAAGATGGAGCTAGAAGAGATCAAGAGGAGGGAATCATGCACAAAGGACTTTTTGAGTATTGTCGGTATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

200

Amino Acids

22.9

Weight (kDa)

5.04

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.2e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	487
AflII	CTTAAG	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	20, 356, 362, 502
AhdI	GACNNNNNGTC	1 cut(s)	171
AluBI	AGCT	4 cut(s)	211, 382, 505, 538
AluI	AGCT	4 cut(s)	211, 382, 505, 538
Alw21I	GWGCWC	4 cut(s)	124, 213, 384, 455
ApoI	RAATTY	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	49, 138, 290
AsuII	TTCGAA	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	213, 384
Bbv12I	GWGCWC	4 cut(s)	124, 213, 384, 455
BccI	CCATC	5 cut(s)	200, 254, 269, 464, 526
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	502
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	20, 264
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	20, 264
BseCI	ATCGAT	1 cut(s)	202
BseGI	GGATG	2 cut(s)	280, 382
BseJI	GATNNNNATC	2 cut(s)	20, 264
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	3 cut(s)	451, 454, 568
BshTI	ACCGGT	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	4 cut(s)	124, 213, 384, 455
BsiSI	CCGG	2 cut(s)	117, 149
BslFI	GGGAC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	4 cut(s)	124, 213, 384, 455
Bsp143I	GATC	2 cut(s)	199, 546
BspDI	ATCGAT	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	2 cut(s)	199, 546
Bst6I	CTCTTC	3 cut(s)	312, 390, 537
BstAFI	CTTAAG	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	280, 382
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	202, 549
BstMBI	GATC	2 cut(s)	199, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	280, 382
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	486
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	2 cut(s)	269, 564
CviJI	RGCY	7 cut(s)	95, 160, 211, 382, 416, 505, 538
CviKI_1	RGCY	7 cut(s)	95, 160, 211, 382, 416, 505, 538
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	201, 548
DpnII	GATC	2 cut(s)	199, 546
DriI	GACNNNNNGTC	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	312, 390, 537
Eam1105I	GACNNNNNGTC	1 cut(s)	171
EarI	CTCTTC	3 cut(s)	312, 390, 537
Ecl136II	GAGCTC	2 cut(s)	211, 382
Eco24I	GRGCYC	2 cut(s)	213, 384
Eco53kI	GAGCTC	2 cut(s)	211, 382
Eco57I	CTGAAG	1 cut(s)	513
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	211, 382
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	213, 384
FaeI	CATG	2 cut(s)	272, 567
FaiI	YATR	7 cut(s)	155, 197, 207, 270, 329, 515, 565
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 234, 266
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	2 cut(s)	268, 563
FokI	GGATG	2 cut(s)	287, 389
FriOI	GRGCYC	2 cut(s)	213, 384
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	502
HapII	CCGG	2 cut(s)	117, 149
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	272, 567
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	176, 235
HindII	GTYRAC	2 cut(s)	176, 235
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	4 cut(s)	44, 188, 446, 560
HpaII	CCGG	2 cut(s)	117, 149
HphI	GGTGA	3 cut(s)	49, 138, 290
Hpy166II	GTNNAC	2 cut(s)	176, 235
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	3 cut(s)	25, 251, 550
Hpy8I	GTNNAC	2 cut(s)	176, 235
HpyAV	CCTTC	2 cut(s)	189, 356
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	272, 567
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	199, 546
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	113, 296, 535
LpnPI	CCDG	4 cut(s)	130, 162, 359, 466
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	201, 548
MboI	GATC	2 cut(s)	199, 546
MboII	GAAGA	7 cut(s)	25, 293, 329, 407, 440, 506, 554
MhlI	GDGCHC	4 cut(s)	124, 213, 384, 455
MluCI	AATT	3 cut(s)	246, 347, 475
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	63, 313, 331, 382, 429, 432, 546, 549
MseI	TTAA	2 cut(s)	8, 51
MslI	CAYNNNNRTG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	117, 149
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	199, 546
NlaIII	CATG	2 cut(s)	272, 567
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	44, 446, 560
PinAI	ACCGGT	1 cut(s)	116
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	2 cut(s)	213, 384
PspEI	GGTNACC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	2 cut(s)	213, 384
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	8, 51
Sau3AI	GATC	2 cut(s)	199, 546
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	124, 213, 384, 455
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	50, 383
SmoI	CTYRAG	2 cut(s)	50, 383
Sse9I	AATT	3 cut(s)	246, 347, 475
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	2 cut(s)	213, 384
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	5 cut(s)	202, 227, 426, 449, 459
TasI	AATT	3 cut(s)	246, 347, 475
TatI	WGTACW	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	44, 446, 560
Tru1I	TTAA	2 cut(s)	8, 51
Tru9I	TTAA	2 cut(s)	8, 51
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	170, 344
Vha464I	CTTAAG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.