RLG00000032746

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000806
Physical Location & Seq
Forward (+)
18571981 .. 18574409
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032746

Sequence Viewer

Length: 657 bp
ATGGGACGAAGGAAGATTGAAATCAAGAAAATCGACAACAAAGCCTACCTAAAGGCCACCTTTTCGAAGCGGCGAAAGGGTTTGTTCCGAAAAGCTGCTGAGCTTTGTGATATGTGCGGTGCCGAGATAGCCATTCTTACCGTTTCACCGGGTGGCAAGTTCTACAATTTTGGTCACCCGAACGTTGATTCCATCATAGCTCGGTATTGTGGTGATGAGACTTCATGTACACTTCATGAAAATCATCATTGTGTGAGTCATGAAGATGATGATGAAGATTTAGAAGGCGAGCAAGAGAAGGGAGAGGATAGTACCGATGATGTCAATGAGGATGAGCCTATCCATGAGGAGGAGCCTATCCACAAGGCCGGCGAGGAGAAGGAGCTTATTGACCTTATCAATAGAGAAGGAGATGGGACGATGCGCTTATCAATAGACTTCTCCCACAAGTTTTGGTGGGATGAGGAGGAGCCTATTGATCCAGAACAACCGGGCAGTGACGATGTGGTGGGCGGCAGTGAGGTAGGCGACAATAGTGCTGCTGAAGGCAGGGTTTCTAACAGTAAAGGTGGTGTTGGCAACGGGCCTTCGACTAGTACTAGTGCCAAAGCCAAGATAAGTAGCAAGAGGAGTAGAAATGGATCTAGTAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

219

Amino Acids

23.98

Weight (kDa)

4.88

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 5.5e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 3 cut(s) 70, 117, 513
AclI AACGTT 1 cut(s) 183
AclWI GGATC 2 cut(s) 473, 649
AcuI CTGAAG 1 cut(s) 564
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 3 cut(s) 229, 313, 598
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 20
AhlI ACTAGT 2 cut(s) 593, 599
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 4 cut(s) 95, 103, 200, 385
AluI AGCT 4 cut(s) 95, 103, 200, 385
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 473, 649
AoxI GGCC 3 cut(s) 54, 366, 584
ApeKI GCWGC 2 cut(s) 95, 539
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 2 cut(s) 150, 492
AsuHPI GGTGA 3 cut(s) 138, 167, 224
AsuII TTCGAA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 82, 526
BccI CCATC 2 cut(s) 200, 407
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BcnI CCSGG 2 cut(s) 150, 492
BcoDI GTCTC 1 cut(s) 212
BcuI ACTAGT 2 cut(s) 593, 599
BfaI CTAG 3 cut(s) 594, 600, 645
BisI GCNGC 4 cut(s) 71, 96, 514, 540
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 72, 97, 515, 541
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 150, 492
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 3 cut(s) 121, 354, 471
BmrFI CCNGG 2 cut(s) 150, 492
BmsI GCATC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 150, 492
BsaBI GATNNNNATC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 20
BseGI GGATG 2 cut(s) 337, 466
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 6 cut(s) 362, 365, 389, 479, 482, 643
BseXI GCAGC 2 cut(s) 82, 526
BshFI GGCC 3 cut(s) 56, 368, 586
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 149, 369, 491
BslFI GGGAC 2 cut(s) 18, 430
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 18, 430
BsnI GGCC 3 cut(s) 56, 368, 586
Bsp119I TTCGAA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 227
Bsp143I GATC 2 cut(s) 478, 641
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 70, 117, 513
BspANI GGCC 3 cut(s) 56, 368, 586
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 2 cut(s) 235, 259
BspLI GGNNCC 3 cut(s) 121, 354, 471
BspPI GGATC 2 cut(s) 473, 649
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 368
BssMI GATC 2 cut(s) 478, 641
Bst4CI ACNGT 2 cut(s) 142, 563
BstAUI TGTACA 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 290, 370
BstDEI CTNAG 1 cut(s) 99
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 2 cut(s) 337, 466
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 2 cut(s) 481, 644
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 478, 641
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 148, 490
BstV1I GCAGC 2 cut(s) 82, 526
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 3 cut(s) 56, 368, 586
BtsCI GGATG 2 cut(s) 337, 466
BtsI GCAGTG 2 cut(s) 502, 523
BtsIMutI CAGTG 2 cut(s) 502, 523
Cac8I GCNNGC 2 cut(s) 290, 370
CciI TCATGA 2 cut(s) 235, 259
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 3 cut(s) 228, 312, 597
CspCI CAANNNNNGTGG 2 cut(s) 434, 469
CviAII CATG 4 cut(s) 225, 236, 260, 344
CviQI GTAC 3 cut(s) 228, 312, 597
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 480, 643
DpnII GATC 2 cut(s) 478, 641
DraIII CACNNNGTG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 564
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
FaeI CATG 4 cut(s) 228, 239, 263, 347
FaiI YATR 6 cut(s) 113, 197, 226, 237, 261, 345
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 18, 430
FatI CATG 4 cut(s) 224, 235, 259, 343
Fnu4HI GCNGC 4 cut(s) 71, 96, 514, 540
FokI GGATG 2 cut(s) 344, 473
Fsp4HI GCNGC 4 cut(s) 71, 96, 514, 540
FspBI CTAG 3 cut(s) 594, 600, 645
GlaI GCGC 1 cut(s) 425
GluI GCNGC 4 cut(s) 71, 96, 514, 540
HaeIII GGCC 3 cut(s) 56, 368, 586
HapII CCGG 3 cut(s) 149, 369, 491
HhaI GCGC 1 cut(s) 426
Hin1II CATG 4 cut(s) 228, 239, 263, 347
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 2 cut(s) 188, 256
HpaII CCGG 3 cut(s) 149, 369, 491
HphI GGTGA 3 cut(s) 138, 167, 224
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 4 cut(s) 25, 236, 260, 482
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 7 cut(s) 3, 278, 292, 373, 401, 539, 597
HpyCH4III ACNGT 2 cut(s) 142, 563
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 228, 239, 263, 347
HspAI GCGC 1 cut(s) 424
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 478, 641
LmnI GCTCC 3 cut(s) 352, 382, 469
LpnPI CCDG 5 cut(s) 162, 382, 495, 504, 535
Lsp1109I GCAGC 2 cut(s) 82, 526
LweI GCATC 1 cut(s) 411
MaeI CTAG 3 cut(s) 594, 600, 645
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 173, 497
MalI GATC 2 cut(s) 480, 643
MboI GATC 2 cut(s) 478, 641
MboII GAAGA 3 cut(s) 25, 275, 287
MflI RGATCY 1 cut(s) 641
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 9 cut(s) 298, 322, 340, 343, 367, 457, 460, 514, 621
MroNI GCCGGC 1 cut(s) 368
MslI CAYNNNNRTG 2 cut(s) 249, 264
MspI CCGG 3 cut(s) 149, 369, 491
MspR9I CCNGG 2 cut(s) 150, 492
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 2 cut(s) 150, 492
NdeII GATC 2 cut(s) 478, 641
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 4 cut(s) 228, 239, 263, 347
NlaIV GGNNCC 3 cut(s) 121, 354, 471
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 173, 497
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 2 cut(s) 235, 259
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 72, 97, 515, 541
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 121, 354, 471
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 3 cut(s) 229, 313, 598
RsaNI GTAC 3 cut(s) 228, 312, 597
RseI CAYNNNNRTG 2 cut(s) 249, 264
SatI GCNGC 4 cut(s) 71, 96, 514, 540
Sau3AI GATC 2 cut(s) 478, 641
Sau96I GGNCC 1 cut(s) 584
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 150, 492
SfaNI GCATC 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 249, 264
SpeI ACTAGT 2 cut(s) 593, 599
Sse9I AATT 1 cut(s) 166
SsiI CCGC 3 cut(s) 70, 117, 513
SspMI CTAG 3 cut(s) 594, 600, 645
StyD4I CCNGG 2 cut(s) 148, 490
TaaI ACNGT 2 cut(s) 142, 563
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 33, 65, 590
TasI AATT 1 cut(s) 166
TatI WGTACW 2 cut(s) 227, 596
TauI GCSGC 2 cut(s) 73, 516
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 2 cut(s) 502, 523
TseFI GTSAC 2 cut(s) 173, 497
TseI GCWGC 2 cut(s) 95, 539
Tsp45I GTSAC 2 cut(s) 173, 497
TspDTI ATGAA 5 cut(s) 213, 224, 252, 276, 288
TspRI CASTG 2 cut(s) 502, 523
XspI CTAG 3 cut(s) 594, 600, 645
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.