Rroxscaffold_6G00429290

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000806
Physical Location & Seq
Reverse (-)
49611665 .. 49612138
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429290.1

Sequence Viewer

Length: 474 bp
ATGAATAAAATAAGCAACAAGAACGCCCTCAAGGCCACCTTCTCGAAGAGGAGACAAGGTCTGTTTCGCAAAGCCGATGAGCTTTGCACCAAAACTGGTGCCCAGATCGCCGTTATCGCCTTCTCACCGGGTGATAAACCGTTCACATTCGGTCACCCTTCAGCAGATTCCGTCATAGACCAATATTATTATCCAGGCAAACAAGTACTCGAGGAGAATAGTAGTCTTGGCAGTGTCGTCATTGATGAGCAAGATGAAAAGGTCAAGTTCTGGTTGGATAAACCCATTGAAGGAATGGGACTAGATGAACTCAAGGAGTTTGAGCGGTGGGTTGAAGATGAATTAGACGAGACGAAGATGAGAAGATCATGCACCAAAGACCTGTTGGGTTTGAACTGGAGAGAGGACCCGAAGCTAGATGAGATGAAGATAAGAGAATCACGCACAGAGGACTTTCTGGCTAATTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

157

Amino Acids

18.17

Weight (kDa)

5.1

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 3 - 50 1.3e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 325
AciI CCGC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 290, 335, 394
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 82, 415
AluI AGCT 2 cut(s) 82, 415
Alw26I GTCTC 2 cut(s) 46, 344
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 117, 143, 146
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 46, 344
BfaI CTAG 2 cut(s) 302, 416
BglI GCCNNNNNGGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 129, 195
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 100, 408
BmrFI CCNGG 2 cut(s) 129, 195
BpmI CTGGAG 1 cut(s) 418
BpuEI CTTGAG 2 cut(s) 14, 296
BpuMI CCSGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 100, 401
BseBI CCWGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 100, 401
BseRI GAGGAG 2 cut(s) 64, 227
BseSI GKGCMC 1 cut(s) 103
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 46, 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 105, 365
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 100, 408
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 325
BsrI ACTGG 2 cut(s) 100, 401
BssMI GATC 2 cut(s) 105, 365
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 152
BstKTI GATC 2 cut(s) 108, 368
BstMAI GTCTC 2 cut(s) 46, 344
BstMBI GATC 2 cut(s) 105, 365
BstMWI GCNNNNNNNGC 3 cut(s) 32, 107, 116
BstNI CCWGG 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 127, 193
BstSLI GKGCMC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 369
CviJI RGCY 5 cut(s) 35, 74, 82, 415, 461
CviKI_1 RGCY 5 cut(s) 35, 74, 82, 415, 461
CviQI GTAC 1 cut(s) 206
DpnI GATC 2 cut(s) 107, 367
DpnII GATC 2 cut(s) 105, 365
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 1 cut(s) 372
FaiI YATR 3 cut(s) 176, 370, 472
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 368
FspBI CTAG 2 cut(s) 302, 416
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 372
HinfI GANTC 2 cut(s) 167, 437
HpaII CCGG 1 cut(s) 128
HphI GGTGA 3 cut(s) 117, 143, 146
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 4 cut(s) 49, 130, 168, 284
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 87, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 107, 116
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 2 cut(s) 105, 365
LpnPI CCDG 9 cut(s) 81, 116, 141, 180, 207, 256, 382, 395, 443
MaeI CTAG 2 cut(s) 302, 416
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 107, 367
MbiI CCGCTC 1 cut(s) 325
MboI GATC 2 cut(s) 105, 365
MboII GAAGA 5 cut(s) 58, 347, 367, 375, 439
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 2 cut(s) 341, 463
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 38, 42, 205, 397, 442
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 129, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 32, 107, 116
NciI CCSGG 1 cut(s) 129
NdeII GATC 2 cut(s) 105, 365
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 100, 408
NmuCI GTSAC 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 209
PfeI GAWTC 2 cut(s) 167, 437
PflFI GACNNNGTC 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 193
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 100, 408
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 105, 365
Sau96I GGNCC 1 cut(s) 406
ScaI AGTACT 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 129, 195
SduI GDGCHC 1 cut(s) 103
SetI ASST 6 cut(s) 41, 61, 84, 264, 384, 417
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 1 cut(s) 406
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 3 cut(s) 29, 209, 311
SmoI CTYRAG 3 cut(s) 29, 209, 311
Sse9I AATT 2 cut(s) 341, 463
SsiI CCGC 1 cut(s) 325
SspI AATATT 1 cut(s) 185
SspMI CTAG 2 cut(s) 302, 416
StyD4I CCNGG 2 cut(s) 127, 193
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 44, 210
TaqII GACCGA 1 cut(s) 140
TasI AATT 2 cut(s) 341, 463
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 2 cut(s) 167, 437
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 17, 270, 321, 354, 440
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 382
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 2 cut(s) 302, 416
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.