Rmu_co8470725.1_g000001

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8470725.1
OG0000806
Physical Location & Seq
Forward (+)
893 .. 1525
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8470725.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atgggacgaaggaagattgaaatcaagaaaatcgacaacaaagcctacctaaaggccaccttttcgaagcggcgaaagggtttgttccgaaaagctgctgagctttgtgatatgtgcggtgccgagatcgccattcttaccgtttcaccgggtggcaagttctacaattttggtcacccgaacgttgattccatcatagctcggtattgtggtgatgagacttcatgtatactttatgaaaatcatgattgtgtgagtcatgaagatgatgatgaagatttagaaggcgagcaagagaaggaagaggatattaccgatgatgtcgatgaggatgagcctatgcctatccatgaggaggagcctatccacaaggccggcgaggagaaggagcttattgaccttatcaatagagaaggagatgggacgatgcgcttatcaatagacttctcccgcaagttttggtggaatgaggaggagcctattgatccagaacaacgtgagatgtacattcatagcctaatggaattgagaaacaatgtgatttgggtgttgaatgataggaacaggagagaatcatacgttaaggactatatgggtggggatataagttatgatatggtaaccctaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

210

Amino Acids

24.58

Weight (kDa)

4.65

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 229
AciI CCGC 3 cut(s) 70, 117, 451
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 20, 553
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 4 cut(s) 95, 103, 200, 391
AluI AGCT 4 cut(s) 95, 103, 200, 391
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 479
AoxI GGCC 2 cut(s) 54, 372
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 432
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 138, 167, 224
AsuII TTCGAA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 200, 413
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 2 cut(s) 71, 96
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 72, 97
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 121, 360, 477
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 20
BseGI GGATG 1 cut(s) 337
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 5 cut(s) 368, 371, 395, 485, 488
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 56, 374
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 149, 375
BslFI GGGAC 2 cut(s) 18, 436
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 18, 436
BsnI GGCC 2 cut(s) 56, 374
Bsp119I TTCGAA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 2 cut(s) 126, 484
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 70, 117, 451
BspANI GGCC 2 cut(s) 56, 374
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 2 cut(s) 244, 259
BspLI GGNNCC 3 cut(s) 121, 360, 477
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 504
BssAI RCCGGY 1 cut(s) 374
BssMI GATC 2 cut(s) 126, 484
BssNAI GTATAC 1 cut(s) 230
Bst1107I GTATAC 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 290, 376
BstDEI CTNAG 1 cut(s) 99
BstEII GGTNACC 2 cut(s) 173, 619
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 129, 487
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 126, 484
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPI GGTNACC 2 cut(s) 173, 619
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 56, 374
BtsCI GGATG 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 290, 376
CciI TCATGA 2 cut(s) 244, 259
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 374
Csp6I GTAC 1 cut(s) 505
CviAII CATG 4 cut(s) 225, 245, 260, 350
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 128, 486
DpnII GATC 2 cut(s) 126, 484
DraIII CACNNNGTG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco91I GGTNACC 2 cut(s) 173, 619
EcoO65I GGTNACC 2 cut(s) 173, 619
FaeI CATG 4 cut(s) 228, 248, 263, 353
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 18, 436
FatI CATG 4 cut(s) 224, 244, 259, 349
FauI CCCGC 1 cut(s) 458
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 71, 96
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 71, 96
GlaI GCGC 1 cut(s) 431
GluI GCNGC 2 cut(s) 71, 96
HaeIII GGCC 2 cut(s) 56, 374
HapII CCGG 2 cut(s) 149, 375
HhaI GCGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 228, 248, 263, 353
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 188, 256, 572
HpaII CCGG 2 cut(s) 149, 375
HphI GGTGA 3 cut(s) 138, 167, 224
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 4 cut(s) 25, 245, 260, 488
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 5 cut(s) 3, 278, 292, 379, 407
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 3 cut(s) 183, 496, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 3 cut(s) 183, 496, 579
Hsp92II CATG 4 cut(s) 228, 248, 263, 353
HspAI GCGC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 126, 484
LmnI GCTCC 3 cut(s) 358, 388, 475
LpnPI CCDG 4 cut(s) 162, 388, 501, 550
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 417
MaeII ACGT 3 cut(s) 183, 496, 579
MaeIII GTNAC 2 cut(s) 173, 619
MalI GATC 2 cut(s) 128, 486
MboI GATC 2 cut(s) 126, 484
MboII GAAGA 4 cut(s) 25, 275, 287, 314
MluCI AATT 2 cut(s) 166, 524
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 7 cut(s) 298, 322, 346, 349, 373, 463, 466
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 2 cut(s) 249, 264
MspI CCGG 2 cut(s) 149, 375
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 126, 484
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 4 cut(s) 228, 248, 263, 353
NlaIV GGNNCC 3 cut(s) 121, 360, 477
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 173
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 2 cut(s) 244, 259
PdiI GCCGGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 188, 572
PkrI GCNGC 2 cut(s) 72, 97
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 183
PspEI GGTNACC 2 cut(s) 173, 619
PspN4I GGNNCC 3 cut(s) 121, 360, 477
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 2 cut(s) 249, 264
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 2 cut(s) 71, 96
Sau3AI GATC 2 cut(s) 126, 484
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 1 cut(s) 417
SfuI TTCGAA 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 249, 264
Sse9I AATT 2 cut(s) 166, 524
SsiI CCGC 3 cut(s) 70, 117, 451
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 3 cut(s) 186, 499, 582
TaqI TCGA 3 cut(s) 33, 65, 324
TasI AATT 2 cut(s) 166, 524
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 188, 572
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 213, 252, 276, 288, 500
XmiI GTMKAC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.