Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Forward (+)

47143036 .. 47143578

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGACTAAAGAAGATCGAAATCAAGAAAATAACCGACAAGAAGTCCCTCAAGGTCACCTACTCTAAGCGGCGAAAAGGTCTGTTTCGCAAAGCCGATGAGTTTTGCTCCAAGACTGGTGCTCAGATCGCCATTATCACCTTTTCTCCGGGTATGAAGCCAATGACATTCGGGAACCCTTCTGTAGAGTCCGTCATAAATCGATATGAGCTCTGCGAACAAAGTTCGAATGACAAAGAATTTCTTGATGAAGATCGTGATCTCCATGAGGTTGGTATGAGTGATGAGGAAAAGGAAATGCTTGAAGGTATGGGACTGAATGAGCTCAAGCAACATGTGAGCAGCGCAGAAGAGCAAAGGACCAAGTTGGCTTGGCAAATCAAAGACAGGAAGAGGAGGGAATCGAGCACCATCGACTTGTTTGGAATGAATGCTTCTGTGGATTTGAACCTCTTTGGTATGAAGGTGGGAGAAAAGATGGAGATAGAAGAGACGAAGAGGAGAGAATCATGCACAAAGGACTTTTTGAGTAACTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

181

Amino Acids

20.75

Weight (kDa)

7.66

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.7e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	305, 448, 538
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	2 cut(s)	211, 325
AluI	AGCT	2 cut(s)	211, 325
Alw21I	GWGCWC	4 cut(s)	124, 213, 327, 410
Alw26I	GTCTC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	49, 130
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	2 cut(s)	213, 327
Bbv12I	GWGCWC	4 cut(s)	124, 213, 327, 410
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	419, 472
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	71, 343
BlsI	GCNGC	2 cut(s)	72, 344
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	360
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	35, 311
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	3 cut(s)	20, 252, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	3 cut(s)	20, 252, 258
BseCI	ATCGAT	1 cut(s)	202
BseJI	GATNNNNATC	3 cut(s)	20, 252, 258
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	409, 514
BseXI	GCAGC	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	4 cut(s)	124, 213, 327, 410
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	3 cut(s)	18, 31, 327
BsmAI	GTCTC	1 cut(s)	485
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	3 cut(s)	18, 31, 327
BsmI	GAATGC	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	4 cut(s)	124, 213, 327, 410
Bsp143I	GATC	4 cut(s)	15, 126, 253, 259
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	15, 126, 253, 259
Bst6I	CTCTTC	4 cut(s)	345, 386, 483, 491
BstBI	TTCGAA	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	66, 123
BstEII	GGTNACC	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	18, 129, 256, 262
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	4 cut(s)	15, 126, 253, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	202
CviAII	CATG	3 cut(s)	266, 335, 510
CviJI	RGCY	5 cut(s)	95, 160, 211, 325, 371
CviKI_1	RGCY	5 cut(s)	95, 160, 211, 325, 371
DdeI	CTNAG	2 cut(s)	66, 123
DpnI	GATC	4 cut(s)	17, 128, 255, 261
DpnII	GATC	4 cut(s)	15, 126, 253, 259
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	345, 386, 483, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	4 cut(s)	345, 386, 483, 491
Ecl136II	GAGCTC	2 cut(s)	211, 325
Eco24I	GRGCYC	2 cut(s)	213, 327
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	2 cut(s)	211, 325
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	211, 325
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	213, 327
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	3 cut(s)	269, 338, 513
FaiI	YATR	9 cut(s)	155, 197, 207, 267, 278, 311, 336, 461, 511
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	3 cut(s)	18, 31, 327
FatI	CATG	3 cut(s)	265, 334, 509
Fnu4HI	GCNGC	2 cut(s)	71, 343
FriOI	GRGCYC	2 cut(s)	213, 327
Fsp4HI	GCNGC	2 cut(s)	71, 343
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	71, 343
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	269, 338, 513
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	188, 401, 506
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	49, 130
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	25, 172, 245, 257
HpyAV	CCTTC	3 cut(s)	189, 299, 457
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	66, 123
Hsp92II	CATG	3 cut(s)	269, 338, 513
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	15, 126, 253, 259
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	102, 162, 373
Lsp1109I	GCAGC	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	55, 530
MalI	GATC	4 cut(s)	17, 128, 255, 261
MboI	GATC	4 cut(s)	15, 126, 253, 259
MboII	GAAGA	6 cut(s)	25, 263, 362, 403, 500, 508
MhlI	GDGCHC	4 cut(s)	124, 213, 327, 410
MluCI	AATT	2 cut(s)	239, 538
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	59, 262, 280, 387, 390, 461, 492
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	15, 126, 253, 259
NlaIII	CATG	3 cut(s)	269, 338, 513
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	227
PciI	ACATGT	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	401, 506
PkrI	GCNGC	2 cut(s)	72, 344
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	334
Psp124BI	GAGCTC	2 cut(s)	213, 327
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	360
SacI	GAGCTC	2 cut(s)	213, 327
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	2 cut(s)	71, 343
Sau3AI	GATC	4 cut(s)	15, 126, 253, 259
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	124, 213, 327, 410
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	50, 326
SmoI	CTYRAG	2 cut(s)	50, 326
Sse9I	AATT	2 cut(s)	239, 538
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	2 cut(s)	213, 327
StyD4I	CCNGG	1 cut(s)	148
TaqI	TCGA	5 cut(s)	18, 202, 227, 404, 414
TasI	AATT	2 cut(s)	239, 538
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	401, 506
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	170, 264, 443, 476
TspGWI	ACGGA	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.