Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

15321171 .. 15321728

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1157700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGGAAGAACAAGATCGACATCAAGAAAATAACCAACAAGAACTACCTCAAGGCCACATTCTCAAAGCGGCGCAAGGGTTTGTTCCGAAAGGCCACTGATCTTTGCTGCTTGACTGGCGCCACCCTTGCGGTTATTGCCTTTTCGCCCGGTAACAATCCTTTCCTCTTCGGCCACCCCTCCGCGGAATCTGTCATTGATCGATTTCTTGGTGAACAAGCGAGGTGTGCATCCGATGATGGCGGAGAGGAGGTTCTTGGGTCAGCTAGTGCCGGCAATGAGCACCAAGATTTGGAATCGAGTCGAGAGGAAGTGAAAGAAGGTTCCGATGTAATGGACGAGGAGAAGGGGAGTTTGTGGTGGGAGAAGCCGATTGAAGAAGGATTGGAACTGCCGGAGCTTAAAAAGTACAAGTCTTTGTTAGAACGTTTGAGGGAGAATGCGGCTATCAAGTTGGATGAGATGAATAGGAGAGAACTTTGTACCAAGGATTATTTGGGTTTGAATTTCGAGATTGGTTCGAGCTCTTCTACTCCTGCCGACGAAAGAGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

186

Amino Acids

20.62

Weight (kDa)

5.18

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.8e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccII	CGCG	1 cut(s)	185
AciI	CCGC	6 cut(s)	70, 131, 183, 185, 243, 443
AclI	AACGTT	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	410, 484
AfiI	CCNNNNNNNGG	2 cut(s)	184, 292
AgsI	TTSAA	2 cut(s)	377, 505
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	266, 400, 525
AluI	AGCT	3 cut(s)	266, 400, 525
Alw21I	GWGCWC	2 cut(s)	285, 527
AoxI	GGCC	3 cut(s)	54, 93, 172
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	505
AspLEI	GCGC	2 cut(s)	75, 122
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	285, 527
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	3 cut(s)	71, 109, 444
BlsI	GCNGC	3 cut(s)	72, 110, 445
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	121, 325
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	183, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 292
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	183, 486
BseGI	GGATG	2 cut(s)	230, 463
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	184, 292
BseMI	GCAATG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	263, 356
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	56, 95, 174
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	285, 527
BsiSI	CCGG	3 cut(s)	150, 273, 395
BslI	CCNNNNNNNGG	2 cut(s)	184, 292
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	56, 95, 174
Bsp1286I	GDGCHC	2 cut(s)	285, 527
Bsp143I	GATC	3 cut(s)	15, 100, 199
BspACI	CCGC	6 cut(s)	70, 131, 183, 185, 243, 443
BspANI	GGCC	3 cut(s)	56, 95, 174
BspDI	ATCGAT	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	121, 325
BspQI	GCTCTTC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	183, 486
BssMI	GATC	3 cut(s)	15, 100, 199
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	486
Bst6I	CTCTTC	2 cut(s)	173, 532
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	230, 463
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	75, 122
BstKTI	GATC	3 cut(s)	18, 103, 202
BstMBI	GATC	3 cut(s)	15, 100, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 128, 137, 227
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	56, 95, 174
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	230, 463
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	2 cut(s)	75, 122
Cfr10I	RCCGGY	1 cut(s)	272
Cfr42I	CCGCGG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	409, 483
CviJI	RGCY	8 cut(s)	56, 95, 174, 266, 370, 400, 446, 525
CviKI_1	RGCY	8 cut(s)	56, 95, 174, 266, 370, 400, 446, 525
CviQI	GTAC	2 cut(s)	409, 483
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	3 cut(s)	17, 102, 201
DpnII	GATC	3 cut(s)	15, 100, 199
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	173, 532
EarI	CTCTTC	2 cut(s)	173, 532
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	486
FaiI	YATR	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	71, 109, 444
FokI	GGATG	2 cut(s)	217, 470
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	71, 109, 444
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	2 cut(s)	74, 121
GluI	GCNGC	3 cut(s)	71, 109, 444
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	56, 95, 174
HapII	CCGG	3 cut(s)	150, 273, 395
HhaI	GCGC	2 cut(s)	75, 122
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	2 cut(s)	73, 120
HinP1I	GCGC	2 cut(s)	73, 120
HinfI	GANTC	3 cut(s)	188, 296, 301
HpaII	CCGG	3 cut(s)	150, 273, 395
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	89, 235, 328
Hpy188III	TCNNGA	3 cut(s)	25, 305, 511
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	3 cut(s)	314, 340, 374
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 128, 137, 227
HpySE526I	ACGT	1 cut(s)	427
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	2 cut(s)	73, 120
KasI	GGCGCC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	15, 100, 199
LguI	GCTCTTC	1 cut(s)	532
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	5 cut(s)	102, 163, 286, 408, 549
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	17, 102, 201
MboI	GATC	3 cut(s)	15, 100, 199
MboII	GAAGA	4 cut(s)	19, 160, 389, 519
MhlI	GDGCHC	2 cut(s)	285, 527
MluCI	AATT	1 cut(s)	505
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	9 cut(s)	59, 176, 190, 216, 241, 244, 301, 334, 426
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	150, 273, 395
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	117, 128, 137, 227
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	15, 100, 199
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	121, 325
PciSI	GCTCTTC	1 cut(s)	532
PctI	GAATGC	1 cut(s)	445
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	188, 296
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	72, 110, 445
PleI	GAGTC	1 cut(s)	309
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	121, 325
RsaI	GTAC	2 cut(s)	410, 484
RsaNI	GTAC	2 cut(s)	409, 483
SacI	GAGCTC	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	71, 109, 444
Sau3AI	GATC	3 cut(s)	15, 100, 199
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	285, 527
SetI	ASST	8 cut(s)	51, 227, 255, 268, 325, 402, 430, 527
SfaNI	GCATC	1 cut(s)	239
SfoI	GGCGCC	1 cut(s)	121
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	6 cut(s)	70, 131, 183, 185, 243, 443
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	6 cut(s)	18, 202, 299, 304, 510, 521
TasI	AATT	1 cut(s)	505
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	2 cut(s)	73, 446
TfiI	GAWTC	2 cut(s)	188, 296
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.