Rorug02G0638700

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000806
Physical Location & Seq
Forward (+)
75146284 .. 75147728
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0638700.1

Sequence Viewer

Length: 732 bp
ATGTTCTCAATCCCACAACCAACTAGTTCTCCACACTTATTCCTCCAGCTGCTGCTGCCGCTACTACACATCAAGGCCGTGTCGATCTTCGGTTACGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTATTCCTTTGGAGCGTTAATGAACCAGAAGATGACTATTGCCCTTATTTTCACATAGAGATATATTCTTCTGAGACTCAAAGTTGGAGACTTCTAGATTCCTCTTTCAATAGGGCAGGTAATGTCAGCTATGATGAAGGGGTATACTGCAATGGCGCAGTTCATTGGGTAGGCATGGATAGTGAGATGTCATACTATCACCTAGATGAAGAGCGTGTTGGATTTGTTAATGGTTCTCCTACGCCTTCGGAGAAGAATTTATTTTGGAGGTATTTTTGGGAGTCTCATGGTGGTGGCCATTTGCATCTTATTGATATTTATCGGCCTAGTCTTACTGCATTTGAAGTGTTGGAGATGGGGAGAGACTACTCTGGTTGGTTTGTCAAGTACCGTGTTGATCTGGATCCCATATGCTCTACTTACCCGCAGCTCCCATGGTATTTTTTTATTGCTCTCTTTATTGCTCGAGAGGAAACTGAAGGAGAGGAAAGTTCATCTTTGTTGCTGCATATTCCTGGTAAAGTCATCTCTTATAATCTTAGGAGCAATACTTTCAAATCTTTTGAGTTACCTCCTGAGGCCGGCGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

243

Amino Acids

28.04

Weight (kDa)

5.03

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 31 - 108 6.1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 282
AciI CCGC 3 cut(s) 59, 563, 723
AclWI GGATC 2 cut(s) 536, 549
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 3 cut(s) 247, 482, 694
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 3 cut(s) 49, 267, 568
AluI AGCT 3 cut(s) 49, 267, 568
Alw26I GTCTC 4 cut(s) 206, 220, 426, 495
AlwI GGATC 2 cut(s) 536, 549
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 4 cut(s) 75, 433, 461, 717
ApeKI GCWGC 5 cut(s) 49, 52, 55, 565, 643
ApoI RAATTY 1 cut(s) 394
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 114, 329
AvaI CYCGRG 1 cut(s) 603
AxyI CCTNAGG 1 cut(s) 714
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 1 cut(s) 541
BbvI GCAGC 5 cut(s) 36, 39, 42, 577, 630
BccI CCATC 1 cut(s) 487
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 4 cut(s) 206, 220, 426, 495
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 233, 341, 465
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 6 cut(s) 50, 53, 56, 59, 566, 644
BlsI GCNGC 6 cut(s) 51, 54, 57, 60, 567, 645
Bme1390I CCNGG 1 cut(s) 654
BmeT110I CYCGRG 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 451
BpmI CTGGAG 1 cut(s) 29
BsaBI GATNNNNATC 2 cut(s) 456, 540
BsaJI CCNNGG 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse118I RCCGGY 1 cut(s) 719
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 2 cut(s) 456, 540
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 572
BseJI GATNNNNATC 2 cut(s) 456, 540
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 201, 705
BseXI GCAGC 5 cut(s) 36, 39, 42, 577, 630
BshFI GGCC 4 cut(s) 77, 435, 463, 719
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 720
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 4 cut(s) 206, 220, 426, 495
BsnI GGCC 4 cut(s) 77, 435, 463, 719
BsoBI CYCGRG 1 cut(s) 603
Bsp143I GATC 3 cut(s) 84, 535, 541
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 3 cut(s) 59, 563, 723
BspANI GGCC 4 cut(s) 77, 435, 463, 719
BspCNI CTCAG 2 cut(s) 202, 706
BspLI GGNNCC 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 536, 549
BspQI GCTCTTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 3 cut(s) 84, 535, 541
BssNAI GTATAC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 572
Bst1107I GTATAC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 3 cut(s) 210, 677, 714
BstDSI CCRYGG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 87, 538, 544
BstMAI GTCTC 4 cut(s) 206, 220, 426, 495
BstMBI GATC 3 cut(s) 84, 535, 541
BstMWI GCNNNNNNNGC 2 cut(s) 55, 58
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstV1I GCAGC 5 cut(s) 36, 39, 42, 577, 630
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 4 cut(s) 77, 435, 463, 719
BtgI CCRYGG 1 cut(s) 572
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 721
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 719
Csp6I GTAC 1 cut(s) 526
CviAII CATG 3 cut(s) 313, 425, 573
CviJI RGCY 8 cut(s) 49, 77, 104, 267, 435, 463, 568, 719
CviKI_1 RGCY 8 cut(s) 49, 77, 104, 267, 435, 463, 568, 719
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 3 cut(s) 210, 677, 714
DpnI GATC 3 cut(s) 86, 537, 543
DpnII GATC 3 cut(s) 84, 535, 541
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 3 cut(s) 316, 428, 576
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 3 cut(s) 312, 424, 572
FauI CCCGC 1 cut(s) 570
FauNDI CATATG 1 cut(s) 548
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 6 cut(s) 50, 53, 56, 59, 566, 644
Fsp4HI GCNGC 6 cut(s) 50, 53, 56, 59, 566, 644
FspBI CTAG 4 cut(s) 24, 233, 341, 465
GlaI GCGC 1 cut(s) 295
GluI GCNGC 6 cut(s) 50, 53, 56, 59, 566, 644
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 4 cut(s) 77, 435, 463, 719
HapII CCGG 1 cut(s) 720
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 316, 428, 576
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 214, 236, 419
HpaII CCGG 1 cut(s) 720
HphI GGTGA 2 cut(s) 114, 329
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 211, 388
Hpy188III TCNNGA 4 cut(s) 233, 539, 605, 713
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 4 cut(s) 123, 269, 393, 611
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 288, 442, 476, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 58
HpyF3I CTNAG 3 cut(s) 210, 677, 714
Hsp92II CATG 3 cut(s) 316, 428, 576
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 719
KroNI GCCGGC 1 cut(s) 721
Kzo9I GATC 3 cut(s) 84, 535, 541
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 150, 573, 681
LpnPI CCDG 8 cut(s) 59, 177, 240, 495, 524, 639, 666, 726
Lsp1109I GCAGC 5 cut(s) 36, 39, 42, 577, 630
LweI GCATC 1 cut(s) 451
MaeI CTAG 4 cut(s) 24, 233, 341, 465
MaeIII GTNAC 2 cut(s) 92, 705
MalI GATC 3 cut(s) 86, 537, 543
MboI GATC 3 cut(s) 84, 535, 541
MboII GAAGA 5 cut(s) 79, 179, 198, 359, 403
MflI RGATCY 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 2 cut(s) 394, 727
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 2 cut(s) 208, 428
MmeI TCCRAC 3 cut(s) 203, 337, 468
MnlI CCTC 8 cut(s) 53, 135, 250, 399, 601, 616, 709, 720
Mox20I TGGCCA 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 719
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 156, 366, 730
MslI CAYNNNNRTG 2 cut(s) 342, 429
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 55, 58
NaeI GCCGGC 1 cut(s) 721
NcoI CCATGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 548
NdeII GATC 3 cut(s) 84, 535, 541
NgoMIV GCCGGC 1 cut(s) 719
NlaIII CATG 3 cut(s) 316, 428, 576
NlaIV GGNNCC 1 cut(s) 543
PaeR7I CTCGAG 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 6 cut(s) 51, 54, 57, 60, 567, 645
PleI GAGTC 2 cut(s) 208, 427
PpsI GAGTC 2 cut(s) 208, 427
PsiI TTATAA 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 342, 429
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 156, 366, 730
SatI GCNGC 6 cut(s) 50, 53, 56, 59, 566, 644
Sau3AI GATC 3 cut(s) 84, 535, 541
SchI GAGTC 2 cut(s) 208, 428
ScrFI CCNGG 1 cut(s) 654
SetI ASST 9 cut(s) 51, 127, 138, 259, 269, 342, 410, 570, 712
SfaNI GCATC 1 cut(s) 451
Sfr274I CTCGAG 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 342, 429
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 2 cut(s) 394, 727
SsiI CCGC 3 cut(s) 59, 563, 723
SspMI CTAG 4 cut(s) 24, 233, 341, 465
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 1 cut(s) 530
TaqI TCGA 2 cut(s) 83, 604
TasI AATT 2 cut(s) 394, 727
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 156, 366, 730
Tru9I TTAA 3 cut(s) 156, 366, 730
TseI GCWGC 5 cut(s) 49, 52, 55, 565, 643
TspDTI ATGAA 5 cut(s) 174, 288, 290, 360, 621
XapI RAATTY 1 cut(s) 394
XbaI TCTAGA 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 4 cut(s) 24, 233, 341, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.