Rh3DG041500

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000806
Physical Location & Seq
Reverse (-)
2745428 .. 2745969
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG041500.1

Sequence Viewer

Length: 495 bp
ATGGGAATAAAGAAGATCCAAATGAAGAAAATAAGCAACAAGAACGCCCTCAAGGCCACCTTCTCGAAGAGGCGACAAGGTCTGTTTCGCAAAGCCGATGAGCTTTGCACCAAAACTGGTGCCCAGATCGCCGTTATCGCCTTCTCACCGGGTGATAAACCGTTCACATTCGGTCACCCTTCAGCAGATTCCGTCATAGACCAATATTATTATCCAGGCAAACAAGTACTCGAGGAGAATAGTAGTCTTGGCAGTGTCGTCATTGATGAGCAAGATGAAAAGGTCAAGTTCTGGTTGGATAAACCCATTGAAGGAATGGGACTAGATGAACTCAAGGAGTTTGAGCGGTGGGTTGAAGATGAATTAGACGAGACGAAGATGAGAAGATCATGCACCAAAGACCTTTTGGGTTTGAACTGGAGAGAGGACCCGAAGCTAGATGAGATGAAGATAAGAGAATCACGCACAAAGGACTTTCTGGCTAATTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

164

Amino Acids

18.98

Weight (kDa)

6.63

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.5e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 1 cut(s) 346
AclWI GGATC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 3 cut(s) 311, 356, 415
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 103, 436
AluI AGCT 2 cut(s) 103, 436
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 427
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 138, 164, 167
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 323, 437
BglI GCCNNNNNGGC 1 cut(s) 53
BmcAI AGTACT 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 150, 216
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 121, 429
BmrFI CCNGG 2 cut(s) 150, 216
BpmI CTGGAG 1 cut(s) 439
BpuEI CTTGAG 2 cut(s) 35, 317
BpuMI CCSGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 121, 422
BseBI CCWGG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 121, 422
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 124
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 15, 126, 386
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 121, 429
BspPI GGATC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 121, 422
BssMI GATC 3 cut(s) 15, 126, 386
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 173
BstKTI GATC 3 cut(s) 18, 129, 389
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 3 cut(s) 15, 126, 386
BstMWI GCNNNNNNNGC 3 cut(s) 53, 128, 137
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 148, 214
BstSLI GKGCMC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 390
CviJI RGCY 5 cut(s) 56, 95, 103, 436, 482
CviKI_1 RGCY 5 cut(s) 56, 95, 103, 436, 482
CviQI GTAC 1 cut(s) 227
DpnI GATC 3 cut(s) 17, 128, 388
DpnII GATC 3 cut(s) 15, 126, 386
DraIII CACNNNGTG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 1 cut(s) 393
FaiI YATR 3 cut(s) 197, 391, 493
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 333
FatI CATG 1 cut(s) 389
FspBI CTAG 2 cut(s) 323, 437
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 393
HinfI GANTC 2 cut(s) 188, 458
HpaII CCGG 1 cut(s) 149
HphI GGTGA 3 cut(s) 138, 164, 167
Hpy166II GTNNAC 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 4 cut(s) 70, 151, 189, 305
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 108, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 128, 137
Hsp92II CATG 1 cut(s) 393
Kzo9I GATC 3 cut(s) 15, 126, 386
LpnPI CCDG 8 cut(s) 102, 137, 162, 201, 228, 277, 403, 464
MaeI CTAG 2 cut(s) 323, 437
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 17, 128, 388
MbiI CCGCTC 1 cut(s) 346
MboI GATC 3 cut(s) 15, 126, 386
MboII GAAGA 7 cut(s) 25, 37, 79, 368, 388, 396, 460
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 2 cut(s) 362, 484
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 4 cut(s) 59, 63, 226, 418
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 150, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 53, 128, 137
NciI CCSGG 1 cut(s) 150
NdeII GATC 3 cut(s) 15, 126, 386
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 121, 429
NmuCI GTSAC 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 2 cut(s) 188, 458
PflFI GACNNNGTC 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 121, 429
PspPI GGNCC 1 cut(s) 427
PspPPI RGGWCCY 1 cut(s) 427
PspXI VCTCGAGB 1 cut(s) 230
PsuI RGATCY 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 78
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 15, 126, 386
Sau96I GGNCC 1 cut(s) 427
ScaI AGTACT 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 150, 216
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 62, 82, 105, 285, 405, 438
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 427
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 3 cut(s) 50, 230, 332
SmoI CTYRAG 3 cut(s) 50, 230, 332
Sse9I AATT 2 cut(s) 362, 484
SsiI CCGC 1 cut(s) 346
SspI AATATT 1 cut(s) 206
SspMI CTAG 2 cut(s) 323, 437
StyD4I CCNGG 2 cut(s) 148, 214
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 65, 231
TaqII GACCGA 1 cut(s) 161
TasI AATT 2 cut(s) 362, 484
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 188, 458
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 38, 291, 342, 375, 461
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 403
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 2 cut(s) 323, 437
ZrmI AGTACT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.