Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Forward (+)

51289515 .. 51305174

Gene Structure 15660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTGGTCTCACTTCGACTTTAGTGGTCCAACTTCTGGGAGCACAGCTTGTGTTGCAATTATTAGAAACAACCAACTTGTTGTTGCCAATGCTGGTGATTCTCGTTGTGTCATATTGAGGAAGGGTCAGATAGGAGATCAAAGATGTGCTAAATTCACACTCCATTTTGTCCAGAGTGTAATACTTGAACTCACTATGCTACAACCAAGTTTTATTTTAATCAATTATTTAAAAAAAAAAAACTATTACGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

9.45

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	11 - 45	2.4e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	12
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	26
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraI	TTTAAA	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	26
FaiI	YATR	2 cut(s)	113, 197
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	21, 78, 185
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	4 cut(s)	57, 152, 223, 253
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	4 cut(s)	218, 230, 252, 256
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	136
PacI	TTAATTAA	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	218, 230, 252, 256
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	2 cut(s)	49, 252
SgeI	CNNG	8 cut(s)	48, 60, 89, 105, 114, 184, 197, 219
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	57, 152, 223, 253
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	15
TasI	AATT	4 cut(s)	57, 152, 223, 253
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	4 cut(s)	218, 230, 252, 256
Tru9I	TTAA	4 cut(s)	218, 230, 252, 256
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.