Rorug05G0080100

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000806
Physical Location & Seq
Reverse (-)
6942362 .. 6943745
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0080100.1

Sequence Viewer

Length: 507 bp
ATGAAGAACACAATCCGATGCTGCATCTCTTGCATTCTACCATGCGGAGCTCTCGACGTGATCCGAGTCGTTCACTGCAACGGCCGAGTGGAAGAGATCAGCGGCTCCATCCGCGCCAGCGAGATCATGAAGGCTCACCCCAAGCACGTGCTCAAGAAGCCCTCTTCCTCGCCGTCCGATCACGGCGGCGTCGTCCCCAAGATCGTGATTGTACCTCCCGACGCCGAGCTCCAGCGCGGCAAGATTTACTTCCTCATGCCAGTTCCTTCCGAGAAGACGACGAAGTCGACCAAAGTGAAGAAGAGGAAAGTCGAGGCGGCAAATAACGACAAAGCCAACAGCGTCGTTATGAACAGTATTGCCATGACGAACCTTCTGATATCGGATCAGTACTTGAGTGAGATACTGTCGGAAAAGGTTTCGACGCAGAGGGATCGGCGGCGAGGACGTGTCGGCGTGTGGAGGCCTCATTTAGAAAGTATTTGCGAGTCACCAAGTGAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

9.53

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 7 - 163 4.3e-37 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 287
AccII CGCG 2 cut(s) 114, 237
AciI CCGC 7 cut(s) 45, 102, 112, 186, 237, 317, 439
AclWI GGATC 3 cut(s) 55, 393, 441
AcoI YGGCCR 1 cut(s) 82
AcvI CACGTG 1 cut(s) 148
AcyI GRCGYC 2 cut(s) 189, 222
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 213, 392
AflIII ACRYGT 1 cut(s) 448
AjiI CACGTC 2 cut(s) 58, 449
AluBI AGCT 2 cut(s) 50, 229
AluI AGCT 2 cut(s) 50, 229
Alw21I GWGCWC 3 cut(s) 52, 153, 231
AlwI GGATC 3 cut(s) 55, 393, 441
AoxI GGCC 2 cut(s) 82, 464
ApeKI GCWGC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 116, 237
AsuHPI GGTGA 2 cut(s) 128, 483
BanII GRGCYC 2 cut(s) 52, 231
BbrPI CACGTG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 3 cut(s) 52, 153, 231
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 116
BceAI ACGGC 3 cut(s) 97, 157, 199
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BisI GCNGC 6 cut(s) 22, 103, 187, 238, 318, 440
BlsI GCNGC 6 cut(s) 23, 104, 188, 239, 319, 441
BmcAI AGTACT 1 cut(s) 392
BmgBI CACGTC 2 cut(s) 58, 449
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 8, 33
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 137, 415
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 2 cut(s) 189, 222
Bse1I ACTGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 8
Bsh1236I CGCG 2 cut(s) 114, 237
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 84, 466
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 3 cut(s) 52, 153, 231
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 2 cut(s) 84, 466
Bsp1286I GDGCHC 3 cut(s) 52, 153, 231
Bsp143I GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
BspACI CCGC 7 cut(s) 45, 102, 112, 186, 237, 317, 439
BspANI GGCC 2 cut(s) 84, 466
BspFNI CGCG 2 cut(s) 114, 237
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 3 cut(s) 55, 393, 441
BsrI ACTGG 1 cut(s) 260
BssMI GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
BssNI GRCGYC 2 cut(s) 189, 222
Bst4CI ACNGT 2 cut(s) 356, 408
Bst6I CTCTTC 3 cut(s) 87, 169, 296
BstACI GRCGYC 2 cut(s) 189, 222
BstAPI GCANNNNNTGC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 118
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 114, 237
BstHHI GCGC 2 cut(s) 116, 237
BstKTI GATC 7 cut(s) 63, 99, 126, 181, 204, 388, 436
BstMBI GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 30, 111, 157
BstUI CGCG 2 cut(s) 114, 237
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 281
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 2 cut(s) 84, 466
BtrI CACGTC 2 cut(s) 58, 449
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 1 cut(s) 126
CfoI GCGC 2 cut(s) 116, 237
CseI GACGC 4 cut(s) 178, 230, 331, 433
Csp6I GTAC 2 cut(s) 212, 391
CviAII CATG 4 cut(s) 42, 127, 256, 364
CviJI RGCY 8 cut(s) 50, 84, 105, 134, 160, 229, 335, 466
CviKI_1 RGCY 8 cut(s) 50, 84, 105, 134, 160, 229, 335, 466
CviQI GTAC 2 cut(s) 212, 391
DpnI GATC 7 cut(s) 62, 98, 125, 180, 203, 387, 435
DpnII GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
DraIII CACNNNGTG 1 cut(s) 497
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 87, 169, 296
EarI CTCTTC 3 cut(s) 87, 169, 296
Ecl136II GAGCTC 2 cut(s) 50, 229
EclXI CGGCCG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 52, 231
Eco32I GATATC 1 cut(s) 381
Eco52I CGGCCG 1 cut(s) 82
Eco53kI GAGCTC 2 cut(s) 50, 229
Eco72I CACGTG 1 cut(s) 148
EcoICRI GAGCTC 2 cut(s) 50, 229
EcoRV GATATC 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 52, 231
FaeI CATG 4 cut(s) 45, 130, 259, 367
FaiI YATR 5 cut(s) 43, 128, 257, 350, 365
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 41, 126, 255, 363
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 6 cut(s) 22, 103, 187, 238, 318, 440
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 2 cut(s) 52, 231
Fsp4HI GCNGC 6 cut(s) 22, 103, 187, 238, 318, 440
GlaI GCGC 2 cut(s) 115, 236
GluI GCNGC 6 cut(s) 22, 103, 187, 238, 318, 440
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 2 cut(s) 84, 466
HgaI GACGC 4 cut(s) 178, 230, 331, 433
HhaI GCGC 2 cut(s) 116, 237
Hin1I GRCGYC 2 cut(s) 189, 222
Hin1II CATG 4 cut(s) 45, 130, 259, 367
Hin6I GCGC 2 cut(s) 114, 235
HinP1I GCGC 2 cut(s) 114, 235
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 66, 488
HphI GGTGA 2 cut(s) 128, 483
Hpy166II GTNNAC 2 cut(s) 73, 288
Hpy188I TCNGA 7 cut(s) 17, 65, 178, 271, 378, 385, 412
Hpy188III TCNNGA 5 cut(s) 53, 127, 154, 205, 218
Hpy8I GTNNAC 2 cut(s) 73, 288
Hpy99I CGWCG 6 cut(s) 59, 194, 224, 283, 347, 427
HpyAV CCTTC 3 cut(s) 124, 276, 383
HpyCH4III ACNGT 2 cut(s) 356, 408
HpyCH4IV ACGT 3 cut(s) 57, 147, 448
HpyCH4V TGCA 3 cut(s) 24, 33, 78
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 111, 157
HpySE526I ACGT 3 cut(s) 57, 147, 448
Hsp92I GRCGYC 2 cut(s) 189, 222
Hsp92II CATG 4 cut(s) 45, 130, 259, 367
HspAI GCGC 2 cut(s) 114, 235
Kzo9I GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
LmnI GCTCC 3 cut(s) 47, 110, 234
LpnPI CCDG 3 cut(s) 130, 245, 273
Lsp1109I GCAGC 1 cut(s) 8
LweI GCATC 2 cut(s) 8, 33
MaeII ACGT 3 cut(s) 57, 147, 448
MaeIII GTNAC 1 cut(s) 489
MalI GATC 7 cut(s) 62, 98, 125, 180, 203, 387, 435
MboI GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
MboII GAAGA 6 cut(s) 16, 104, 156, 286, 310, 313
MhlI GDGCHC 3 cut(s) 52, 153, 231
MlyI GAGTC 2 cut(s) 75, 497
MmeI TCCRAC 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 33
MvnI CGCG 2 cut(s) 114, 237
MwoI GCNNNNNNNGC 3 cut(s) 30, 111, 157
NdeII GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
NlaIII CATG 4 cut(s) 45, 130, 259, 367
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 2 cut(s) 110, 250
NmuCI GTSAC 1 cut(s) 489
PagI TCATGA 1 cut(s) 126
PceI AGGCCT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 284
PctI GAATGC 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 283
PkrI GCNGC 6 cut(s) 23, 104, 188, 239, 319, 441
PleI GAGTC 2 cut(s) 74, 496
PmaCI CACGTG 1 cut(s) 148
PmlI CACGTG 1 cut(s) 148
PpsI GAGTC 2 cut(s) 74, 496
Ppu21I YACGTR 1 cut(s) 148
Psp124BI GAGCTC 2 cut(s) 52, 231
PspCI CACGTG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 2 cut(s) 213, 392
RsaNI GTAC 2 cut(s) 212, 391
SacI GAGCTC 2 cut(s) 52, 231
SalI GTCGAC 1 cut(s) 286
SatI GCNGC 6 cut(s) 22, 103, 187, 238, 318, 440
Sau3AI GATC 7 cut(s) 60, 96, 123, 178, 201, 385, 433
ScaI AGTACT 1 cut(s) 392
SchI GAGTC 2 cut(s) 75, 497
SduI GDGCHC 3 cut(s) 52, 153, 231
SetI ASST 8 cut(s) 52, 60, 150, 217, 231, 375, 420, 451
SfaNI GCATC 2 cut(s) 8, 33
SmlI CTYRAG 2 cut(s) 152, 394
SmoI CTYRAG 2 cut(s) 152, 394
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 7 cut(s) 45, 102, 112, 186, 237, 317, 439
SstI GAGCTC 2 cut(s) 52, 231
StuI AGGCCT 1 cut(s) 466
TaaI ACNGT 2 cut(s) 356, 408
TaiI ACGT 3 cut(s) 60, 150, 451
TaqI TCGA 4 cut(s) 54, 287, 312, 422
TatI WGTACW 1 cut(s) 390
TauI GCSGC 5 cut(s) 105, 189, 240, 320, 442
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 17, 143, 365
TspRI CASTG 1 cut(s) 80
Tth111I GACNNNGTC 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.