Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Forward (+)

47543 .. 48187

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgggacgcaggaagatagaaatcgagaaaatcagtaacaagaactacctaatggccacattctctaagcggcgaaagggtctgtttcacaaagccagtgagttttgcaggttatccggtgccgaaatcgccatcgttgtcttttcgccaggtgaccgtgtttaccggtttggtcacccttcagcagactccatcattgaccggtatgatgatccgctaaccgaaaataacaataataagggcacacgagagtttccgtatacacttgacgacgaaggcaatgaagctcatgatgatgatttggcgggcagcaagcttggaaaagaggcagctgatggtaaggatgagcttggaaaggccaggttttggtgggataatctgcctattgaagatatgggactaaaacaacttgagcaatataaaagttgcttagaagttataagaaacgagctggcatatgaattacatgagacgaagagaagagaatcacacaccaaagattttttgagtttgattggcttcagtactagaacttctacttctgatccagtaagagaacgcaactgtgatattgtagaagaacaccaagcacagatttcgtggagcagcatgacgagcgcaattaacccaaattttactatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

214

Amino Acids

24.54

Weight (kDa)

5.6

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	3 cut(s)	70, 215, 305
AclWI	GGATC	2 cut(s)	206, 539
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	165, 505
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgeI	ACCGGT	2 cut(s)	165, 201
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	148, 359
AluBI	AGCT	5 cut(s)	287, 316, 332, 349, 451
AluI	AGCT	5 cut(s)	287, 316, 332, 349, 451
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	206, 539
AoxI	GGCC	2 cut(s)	54, 357
ApeKI	GCWGC	3 cut(s)	309, 329, 606
ApoI	RAATTY	1 cut(s)	631
AsiGI	ACCGGT	2 cut(s)	165, 201
AspLEI	GCGC	1 cut(s)	620
AsuHPI	GGTGA	2 cut(s)	164, 167
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BauI	CACGAG	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	321, 341, 618
BccI	CCATC	3 cut(s)	140, 200, 329
BcgI	CGANNNNNNTGC	2 cut(s)	579, 613
BciT130I	CCWGG	2 cut(s)	150, 361
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	4 cut(s)	71, 310, 330, 607
BlsI	GCNGC	4 cut(s)	72, 311, 331, 608
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	150, 361
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	150, 361
BpuEI	CTTGAG	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	20
BsaWI	WCCGGW	3 cut(s)	116, 165, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	2 cut(s)	165, 201
Bse1I	ACTGG	2 cut(s)	96, 548
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	150, 361
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	96, 548
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	321, 341, 618
BshFI	GGCC	2 cut(s)	56, 359
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	2 cut(s)	165, 201
BsiSI	CCGG	3 cut(s)	117, 166, 202
BslFI	GGGAC	2 cut(s)	18, 411
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	18, 411
BsnI	GGCC	2 cut(s)	56, 359
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	211, 544
BspACI	CCGC	3 cut(s)	70, 215, 305
BspANI	GGCC	2 cut(s)	56, 359
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	206, 539
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	2 cut(s)	165, 201
BsrI	ACTGG	2 cut(s)	96, 548
BssAI	RCCGGY	2 cut(s)	165, 201
BssMI	GATC	2 cut(s)	211, 544
BssNAI	GTATAC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	150, 361
Bst4CI	ACNGT	2 cut(s)	158, 566
Bst6I	CTCTTC	2 cut(s)	470, 475
BstC8I	GCNNGC	3 cut(s)	307, 314, 453
BstDEI	CTNAG	2 cut(s)	66, 430
BstEII	GGTNACC	2 cut(s)	152, 173
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	214, 547
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	211, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 615
BstNI	CCWGG	2 cut(s)	150, 361
BstPI	GGTNACC	2 cut(s)	152, 173
BstSCI	CCNGG	2 cut(s)	148, 359
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	321, 341, 618
BstZ17I	GTATAC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	56, 359
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	307, 314, 453
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	2 cut(s)	165, 201
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	525
CspAI	ACCGGT	2 cut(s)	165, 201
CviAII	CATG	3 cut(s)	290, 467, 610
CviJI	RGCY	9 cut(s)	56, 95, 287, 316, 332, 349, 359, 451, 519
CviKI_1	RGCY	9 cut(s)	56, 95, 287, 316, 332, 349, 359, 451, 519
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	2 cut(s)	66, 430
DpnI	GATC	2 cut(s)	213, 546
DpnII	GATC	2 cut(s)	211, 544
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	470, 475
EarI	CTCTTC	2 cut(s)	470, 475
Eco57I	CTGAAG	2 cut(s)	165, 505
Eco91I	GGTNACC	2 cut(s)	152, 173
EcoO65I	GGTNACC	2 cut(s)	152, 173
EcoRII	CCWGG	2 cut(s)	148, 359
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	3 cut(s)	293, 470, 613
FaqI	GGGAC	2 cut(s)	18, 411
FatI	CATG	3 cut(s)	289, 466, 609
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	4 cut(s)	71, 310, 330, 607
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	71, 310, 330, 607
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	4 cut(s)	71, 310, 330, 607
HaeIII	GGCC	2 cut(s)	56, 359
HapII	CCGG	3 cut(s)	117, 166, 202
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	3 cut(s)	293, 470, 613
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	188, 485
HpaII	CCGG	3 cut(s)	117, 166, 202
HphI	GGTGA	2 cut(s)	164, 167
Hpy166II	GTNNAC	2 cut(s)	163, 261
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	2 cut(s)	25, 290
Hpy8I	GTNNAC	2 cut(s)	163, 261
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	189, 269
HpyCH4III	ACNGT	2 cut(s)	158, 566
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 615
HpyF3I	CTNAG	2 cut(s)	66, 430
Hsp92II	CATG	3 cut(s)	293, 470, 613
HspAI	GCGC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	211, 544
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	3 cut(s)	321, 341, 618
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	35, 152, 173
MalI	GATC	2 cut(s)	213, 546
MboI	GATC	2 cut(s)	211, 544
MboII	GAAGA	5 cut(s)	25, 401, 487, 492, 590
MhlI	GDGCHC	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	461, 621, 631
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	1 cut(s)	319
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	624, 643
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	117, 166, 202
MspR9I	CCNGG	2 cut(s)	150, 361
MvaI	CCWGG	2 cut(s)	150, 361
MwoI	GCNNNNNNNGC	2 cut(s)	128, 615
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	211, 544
NlaIII	CATG	3 cut(s)	293, 470, 613
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	152, 173
PagI	TCATGA	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	366
PinAI	ACCGGT	2 cut(s)	165, 201
PkrI	GCNGC	4 cut(s)	72, 311, 331, 608
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	148, 359
PspEI	GGTNACC	2 cut(s)	152, 173
PspGI	CCWGG	2 cut(s)	148, 359
PspN4I	GGNNCC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	624, 643
SatI	GCNGC	4 cut(s)	71, 310, 330, 607
Sau3AI	GATC	2 cut(s)	211, 544
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	150, 361
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	9 cut(s)	51, 113, 154, 289, 318, 334, 351, 365, 453
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	461, 621, 631
SsiI	CCGC	3 cut(s)	70, 215, 305
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	148, 359
TaaI	ACNGT	2 cut(s)	158, 566
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	461, 621, 631
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	624, 643
Tru9I	TTAA	2 cut(s)	624, 643
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	152, 173
TseI	GCWGC	3 cut(s)	309, 329, 606
Tsp45I	GTSAC	2 cut(s)	152, 173
TspDTI	ATGAA	2 cut(s)	297, 474
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.