Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

29301840 .. 29302349

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGACGAAGAAAGATTGAAATCAAGAAAATCAACAACAAAGCCTACCTAAAGGCCACCTTTTCGAAGCGACGAAAGGGTTTGTTCCGAAAAGCTGCCGAGCTTTGTCATATGTGCGGTGCTGAGATCGCCATTCTTACCGTTTCACCGGGTGGCAAGTTCTACAACTTTGGTCACCCTTATGTTGATTCCATCATAGCTCGGTATTGTGGTGATGAGACTTCATGTACACTTCATGAAAATCATGAGTGTGTGAGTCATGAAGATGATGATGAAGATTTAGAAGGCGGGCAAGAGAAGGAAGAGGGTAGTACCGATGATGTTGATGAGGATGAGCCTATCCATGAGAAGAGCCACAAGTTTTGGTGGGATGAGGAGGAGCCTATTGATCCAGAACAACGTGAGATGTTCAGTCATAGCCTACAGGAATTGAGAAACAATGCGGTTTGGGTGTTGAATGATAGGAACAGGAGAGAATCATACGTTAAGGACTATATGGGTGGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

169

Amino Acids

19.67

Weight (kDa)

5.12

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	117, 288, 443
AclWI	GGATC	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	229, 313
AgsI	TTSAA	2 cut(s)	20, 457
AluBI	AGCT	3 cut(s)	95, 103, 200
AluI	AGCT	3 cut(s)	95, 103, 200
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	138, 167, 224
AsuII	TTCGAA	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	20
BseGI	GGATG	2 cut(s)	337, 376
BseJI	GATNNNNATC	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	389, 392
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	126, 388
BspACI	CCGC	3 cut(s)	117, 288, 443
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	3 cut(s)	235, 244, 259
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	227
BssMI	GATC	2 cut(s)	126, 388
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	297, 344
BstAUI	TGTACA	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	337, 376
BstKTI	GATC	2 cut(s)	129, 391
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	126, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	337, 376
Cac8I	GCNNGC	1 cut(s)	290
CciI	TCATGA	3 cut(s)	235, 244, 259
Csp6I	GTAC	2 cut(s)	228, 312
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	5 cut(s)	225, 236, 245, 260, 344
CviJI	RGCY	9 cut(s)	44, 56, 95, 103, 200, 337, 354, 382, 420
CviKI_1	RGCY	9 cut(s)	44, 56, 95, 103, 200, 337, 354, 382, 420
CviQI	GTAC	2 cut(s)	228, 312
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	128, 390
DpnII	GATC	2 cut(s)	126, 388
DraIII	CACNNNGTG	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	297, 344
EarI	CTCTTC	2 cut(s)	297, 344
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
FaeI	CATG	5 cut(s)	228, 239, 248, 263, 347
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	224, 235, 244, 259, 343
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	2 cut(s)	344, 383
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	5 cut(s)	228, 239, 248, 263, 347
HinfI	GANTC	3 cut(s)	188, 256, 476
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	3 cut(s)	138, 167, 224
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	5 cut(s)	25, 236, 245, 260, 392
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	278, 292
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	400, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	400, 483
Hsp92II	CATG	5 cut(s)	228, 239, 248, 263, 347
Kzo9I	GATC	2 cut(s)	126, 388
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	4 cut(s)	162, 405, 410, 454
Lsp1109I	GCAGC	1 cut(s)	82
MaeII	ACGT	2 cut(s)	400, 483
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	128, 390
MboI	GATC	2 cut(s)	126, 388
MboII	GAAGA	5 cut(s)	21, 275, 287, 314, 361
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	298, 322, 367, 370
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	3 cut(s)	180, 249, 264
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	2 cut(s)	126, 388
NlaIII	CATG	5 cut(s)	228, 239, 248, 263, 347
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	3 cut(s)	235, 244, 259
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	188, 476
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	381
RsaI	GTAC	2 cut(s)	229, 313
RsaNI	GTAC	2 cut(s)	228, 312
RseI	CAYNNNNRTG	3 cut(s)	180, 249, 264
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	126, 388
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	7 cut(s)	51, 62, 97, 105, 202, 403, 486
SfcI	CTRYAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	180, 249, 264
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	3 cut(s)	117, 288, 443
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	403, 486
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	428
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	188, 476
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	213, 224, 252, 276, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.